Pairwise Alignments

Query, 1049 a.a., multidrug efflux system protein (NCBI) from Escherichia coli BW25113

Subject, 1038 a.a., multidrug efflux RND transporter permease AcrD from Pantoea sp. MT58

 Score = 1327 bits (3433), Expect = 0.0
 Identities = 677/1041 (65%), Positives = 838/1041 (80%), Gaps = 3/1041 (0%)

Query: 1    MPNFFIDRPIFAWVIAIIIMLAGGLAILKLPVAQYPTIAPPAVTISASYPGADAKTVQDT 60
            M NFFIDRPIFAWV+AI++ L G L+I+ LPV QYP +APP V I+A+YPGA A+T+++T
Sbjct: 1    MSNFFIDRPIFAWVLAILLCLCGTLSIISLPVEQYPDLAPPNVRITANYPGASAETLENT 60

Query: 61   VTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQLAMPLLPQ 120
            VTQVIEQNM GIDNLMYMSSNS +TG  QITLTF +GT+ D A+ QVQN+LQ A+  LPQ
Sbjct: 61   VTQVIEQNMTGIDNLMYMSSNSSNTGQAQITLTFTAGTNPDEARQQVQNQLQSALRKLPQ 120

Query: 121  EVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRTSGVGDVQLFGS 180
             VQ QGV+V K+  S +++V  ++TDG+M ++DISDYVA+N++D +SR  GVG V  +GS
Sbjct: 121  AVQSQGVTVNKTGDSNILMVAFVSTDGSMDKQDISDYVASNIQDPLSRIDGVGQVDAYGS 180

Query: 181  QYAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQQLNASIIAQTRL 240
            QYAMRIW++PN+L  + LT  DV+ AI++QN QVA GQ+GG P V+ Q LNA++ AQ+ L
Sbjct: 181  QYAMRIWLDPNKLIAYALTTDDVVNAIQSQNTQVAVGQVGGLPSVEKQALNATVNAQSML 240

Query: 241  TSTEEFGKILLKVNQDGSRVLLRDVAKIELGGENYDIIAEFNGQPASGLGIKLATGANAL 300
             + E+F  I LK N DGS V L DVA + LG E YD ++ +NGQPASGLG+KLA+GAN +
Sbjct: 241  QTPEQFRAITLKNNPDGSVVTLGDVATVALGAEKYDYLSRYNGQPASGLGVKLASGANEM 300

Query: 301  DTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQ 360
            +T   +RA + ++  +FP GL+    Y+T+PFVK SI +VVKTL+EAI+LVF VMYLF+Q
Sbjct: 301  NTDKLVRARIEELSHYFPHGLEAKIAYETSPFVKASITDVVKTLLEAIVLVFGVMYLFMQ 360

Query: 361  NFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420
            NFRATLIPTIAVPVVL GTF+VL AFGFSINTLTMF MVLAIGLLVDDAIVVVENVER+M
Sbjct: 361  NFRATLIPTIAVPVVLFGTFSVLYAFGFSINTLTMFAMVLAIGLLVDDAIVVVENVERIM 420

Query: 421  AEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMAL 480
             EEGL P+ ATRKSMGQIQGALVGIA+VLSAVFVPMAFFGG+ GAIYRQFSITIVSAM L
Sbjct: 421  HEEGLSPRAATRKSMGQIQGALVGIALVLSAVFVPMAFFGGTVGAIYRQFSITIVSAMVL 480

Query: 481  SVLVALILTPALCATMLKPIAKGDHGEGKKGFFGWFNRMFEKSTHHYTDSVGGILRSTGR 540
            SVLVA+ILTPALCAT+LKP A+G+  E ++GFFGWFNR F ++   Y   V GILR+ GR
Sbjct: 481  SVLVAMILTPALCATLLKPAAQGEVHE-RRGFFGWFNRHFNRNADRYERGVAGILRTGGR 539

Query: 541  YLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTMVQLPAGATQERTQKVLNEVTHYYLT 600
            +L++Y+ I+  MA+LF+RLP+SFLP ED+GVF+T VQLPAGAT E+T  V+ +V +YYLT
Sbjct: 540  WLLVYVAIIGLMAFLFLRLPTSFLPLEDRGVFLTQVQLPAGATLEQTASVVAKVENYYLT 599

Query: 601  KEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWADRPGEENKVEAITMRATRAFSQIKD 660
            KEK NV SVF+  G G  G GQN    FV LKDW  RPG +    AI  RAT+AF +IK+
Sbjct: 600  KEKANVLSVFSTIGAGPGGNGQNVARLFVRLKDWEARPGADRTSFAIIDRATKAFQKIKE 659

Query: 661  AMVFAFNLPAIVELGTATGFDFELIDQAGLGHEKLTQARNQLLAEAAKHPDMLTSVRPNG 720
              V A + PAI  +G+++GFD EL D AG+GH +L   R++LL E A +   L+ VR NG
Sbjct: 660  GRVIASSPPAITGMGSSSGFDMELQDHAGIGHTQLMAMRDKLL-EMAGNDKSLSRVRHNG 718

Query: 721  LEDTPQFKIDIDQEKAQALGVSINDINTTLGAAWGGSYVNDFIDRGRVKKVYVMSEAKYR 780
            L+D+PQ +ID+D  KAQALGVS++ IN T+  AWG +YVNDF+DRGRVKKVYV + A++R
Sbjct: 719  LDDSPQLQIDVDARKAQALGVSLDTINDTMTTAWGSTYVNDFLDRGRVKKVYVQAAAEFR 778

Query: 781  MLPDDIGDWYVRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEA 840
            MLPDD+  WYVR + G+MVPFSAF++SRWE GSPRLERYNG  S+EI+G+AA G S+G A
Sbjct: 779  MLPDDVNKWYVRNSSGKMVPFSAFATSRWETGSPRLERYNGYSSLEIVGEAANGVSSGTA 838

Query: 841  MELMEQLASKLPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLAALYESWSIPFS 900
            M+ ME+L + LP GVG+ WTG SYQERLSG+QAP+LYAISL+VVFLCLAALYESWSIPFS
Sbjct: 839  MDEMEKLVNALPLGVGFQWTGASYQERLSGSQAPALYAISLLVVFLCLAALYESWSIPFS 898

Query: 901  VMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGL 960
            VMLVVPLGV+GAL+A   RGL NDVYFQVGLLT +GLSAKNAILIVEFA ++  K G+ L
Sbjct: 899  VMLVVPLGVVGALIATWLRGLENDVYFQVGLLTVVGLSAKNAILIVEFANEINSK-GREL 957

Query: 961  IEATLDAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAIF 1020
            +E+TL+A R RLRPILMTSLAFI GV+P+ IS+GAGSG+Q+AVGTGVMGGM++AT+LAIF
Sbjct: 958  VESTLEASRQRLRPILMTSLAFIFGVLPMAISSGAGSGSQHAVGTGVMGGMISATLLAIF 1017

Query: 1021 FVPVFFVVVRRRFSRKNEDIE 1041
            FVP+FFV+VRRRF  K + ++
Sbjct: 1018 FVPLFFVLVRRRFPLKEKPLD 1038