Pairwise Alignments

Query, 1049 a.a., multidrug efflux system protein (NCBI) from Escherichia coli BW25113

Subject, 1073 a.a., multidrug efflux RND transporter permease subunit from Burkholderia phytofirmans PsJN

 Score = 1379 bits (3568), Expect = 0.0
 Identities = 694/1052 (65%), Positives = 843/1052 (80%), Gaps = 5/1052 (0%)

Query: 1    MPNFFIDRPIFAWVIAIIIMLAGGLAILKLPVAQYPTIAPPAVTISASYPGADAKTVQDT 60
            M  FFIDRPIFAWVIAII+MLAG  ++  LP+AQYPTIAPPAV ISA+YPGA AKTV++T
Sbjct: 1    MAKFFIDRPIFAWVIAIILMLAGIASVFTLPIAQYPTIAPPAVQISATYPGASAKTVENT 60

Query: 61   VTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQLAMPLLPQ 120
            VTQVIEQ M+G+D+L+Y+SS SD +GT  ITLTF +GT+ DIAQVQVQNKLQLA PLLPQ
Sbjct: 61   VTQVIEQQMSGLDHLLYLSSTSDDSGTATITLTFAAGTNPDIAQVQVQNKLQLATPLLPQ 120

Query: 121  EVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRTSGVGDVQLFGS 180
             VQQ G  V KSSSSFL+V+  ++ DG+M + D+++YVA+N++D +SR  GVG V LFGS
Sbjct: 121  AVQQLGTKVTKSSSSFLLVMAFVSEDGSMNKYDLANYVASNIQDPVSRIDGVGTVTLFGS 180

Query: 181  QYAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQQLNASIIAQTRL 240
            QYAMRIW++ N+L  F LTPVDV TA++AQN QVA G LGGTP V GQ L A+I   T L
Sbjct: 181  QYAMRIWLDANKLTNFGLTPVDVETALQAQNVQVAGGSLGGTPSVPGQVLQATITEATLL 240

Query: 241  TSTEEFGKILLKVNQDGSRVLLRDVAKIELGGENYDIIAEFNGQPASGLGIKLATGANAL 300
             + E+FG +LLKVNQDGSRV ++DVA+IELGGENY+   ++NGQP +G GI+LATGANAL
Sbjct: 241  NTPEQFGNVLLKVNQDGSRVRIKDVARIELGGENYNFDTKYNGQPTAGFGIQLATGANAL 300

Query: 301  DTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQ 360
             TA A+RA++A++  +FP GL + YPYDTTPFV++SI EVVKTL+E I+LVFLVMYLFLQ
Sbjct: 301  ATAKAVRAKVAELSKYFPHGLVVQYPYDTTPFVRLSIEEVVKTLLEGIVLVFLVMYLFLQ 360

Query: 361  NFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420
            N RATLIPTIAVPVVLLGTFA++   GFSINTL+MFG+VLAIGLLVDDAIVVVENVERVM
Sbjct: 361  NLRATLIPTIAVPVVLLGTFAIMGLVGFSINTLSMFGLVLAIGLLVDDAIVVVENVERVM 420

Query: 421  AEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMAL 480
             EEGL P++ATRK+M QI GALVG+A+VLSAVFVP+AF GGS GAIYRQFS+TIV+AM L
Sbjct: 421  QEEGLSPRDATRKAMDQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIVAAMVL 480

Query: 481  SVLVALILTPALCATMLKPIAKGDHGEGKKGFFGWFNRMFEKSTHHYTDSVGGILRSTGR 540
            SVLVALILTPALCAT+LKPI +G H E   GFFGWFNR F KS   Y   V  +++ +GR
Sbjct: 481  SVLVALILTPALCATILKPIEQG-HQEKTTGFFGWFNRTFNKSRDKYHSGVHHVIKRSGR 539

Query: 541  YLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTMVQLPAGATQERTQKVLNEVTHYYLT 600
            +L++Y++++  +  LFV+LP SFLPDEDQG    +VQ P+G+TQE T + L +V+ Y L 
Sbjct: 540  WLIIYMVVIFAVGLLFVKLPKSFLPDEDQGTMFVLVQTPSGSTQETTARALKDVSDYLLN 599

Query: 601  KEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWADRPGEENKVEAITMRATRAFSQIKD 660
             EK+ VES F VNGF FAGRGQN G+ FV +KD+A R   + KV+A+  R    F   K+
Sbjct: 600  TEKSIVESTFTVNGFSFAGRGQNAGLVFVRMKDYAQRQHSDQKVQALVGRLFMHFGSYKN 659

Query: 661  AMVFAFNLPAIVELGTATGFDFELIDQAGLGHEKLTQARNQLLAEAAKHPDMLTSVRPNG 720
            A+V+  N P+I ELGTA GFDFEL D+AG+GHEKL +ARN LL  AAK P  L  VRPNG
Sbjct: 660  ALVYPVNPPSIPELGTAAGFDFELQDRAGVGHEKLMEARNMLLGMAAKDP-TLAQVRPNG 718

Query: 721  LEDTPQFKIDIDQEKAQALGVSINDINTTLGAAWGGSYVNDFIDR-GRVKKVYVMSEAKY 779
            L DTPQFK+DID EKA ALGVS++ I+ T   AW   YVN+F+D  GR+KKVY+  +A +
Sbjct: 719  LNDTPQFKVDIDHEKASALGVSLSAIDQTFSIAWASQYVNNFLDTDGRIKKVYLQGDAPF 778

Query: 780  RMLPDDIGDWYVRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGE 839
            RM P+D+  WYVR + G MVPFS+F+S  W YGSP+LERYNG+ ++EI G AAPGKSTG+
Sbjct: 779  RMTPEDLNAWYVRNSAGGMVPFSSFASGTWTYGSPKLERYNGISAVEIQGAAAPGKSTGQ 838

Query: 840  AMELMEQLASKLPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLAALYESWSIPF 899
            AM  ME L +KLP GVGY+WTG+S QER SG+QAP LY IS++VVFLCLAALYESWSIPF
Sbjct: 839  AMTAMEALVAKLPAGVGYEWTGLSLQERQSGSQAPILYGISILVVFLCLAALYESWSIPF 898

Query: 900  SVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG 959
            SV++VVPLGVIGALLAAT RGL NDV+FQVGLLTT+GLSAKNAILIVEFA++L   EG G
Sbjct: 899  SVIMVVPLGVIGALLAATLRGLENDVFFQVGLLTTVGLSAKNAILIVEFARELQQGEGMG 958

Query: 960  LIEATLDAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019
             IEA L+A R+RLRPILMTSLAFILGVMPL IS GAGS +Q+A+GTGV+GGM+TAT LAI
Sbjct: 959  PIEAALEAARLRLRPILMTSLAFILGVMPLAISNGAGSASQHAIGTGVIGGMLTATFLAI 1018

Query: 1020 FFVPVFFVVVRRRFSRKNEDIEH--SHTVDHH 1049
            F +P+FFVV+R +F  + ED +   +H   HH
Sbjct: 1019 FMIPMFFVVIRAKFGGEKEDPDEALAHYNQHH 1050