Pairwise Alignments

Query, 1049 a.a., multidrug efflux system protein (NCBI) from Escherichia coli BW25113

Subject, 1044 a.a., hydrophobe/amphiphile efflux-1 (HAE1) family protein (RefSeq) from Shewanella sp. ANA-3

 Score = 1360 bits (3519), Expect = 0.0
 Identities = 686/1038 (66%), Positives = 843/1038 (81%), Gaps = 5/1038 (0%)

Query: 1    MPNFFIDRPIFAWVIAIIIMLAGGLAILKLPVAQYPTIAPPAVTISASYPGADAKTVQDT 60
            M  FFIDRPIFAWVIA+IIMLAG L+I  LPV+QYP+IAPP V ISA+YPGA AK V+D+
Sbjct: 1    MARFFIDRPIFAWVIALIIMLAGVLSIRSLPVSQYPSIAPPTVVISANYPGASAKIVEDS 60

Query: 61   VTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQLAMPLLPQ 120
            VTQVIEQ M GID+L Y++S SDS G   ITLTF +  D DIAQVQVQNKLQ AM LLPQ
Sbjct: 61   VTQVIEQRMKGIDHLRYIASTSDSFGNASITLTFNAEADPDIAQVQVQNKLQGAMTLLPQ 120

Query: 121  EVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRTSGVGDVQLFGS 180
            EVQ QGV+V KSSS FLMV+G ++TDG++ + DI+DYV AN++D +SR  GVG++Q+FG+
Sbjct: 121  EVQSQGVNVNKSSSGFLMVLGFVSTDGSLDKGDIADYVGANIQDPMSRVPGVGEIQIFGA 180

Query: 181  QYAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQQLNASIIAQTRL 240
            QYAMRIW++P +L ++ LT +DV++AI+AQNAQV+AGQLGGTP + GQ+LNA++ AQ+RL
Sbjct: 181  QYAMRIWLDPLKLTQYNLTSLDVVSAIRAQNAQVSAGQLGGTPSLPGQELNATVSAQSRL 240

Query: 241  TSTEEFGKILLKVNQDGSRVLLRDVAKIELGGENYDIIAEFNGQPASGLGIKLATGANAL 300
             + E+F KI++K +  G+ V L DVA++ELG E+Y + + +NG+PASG+ IKLATGANAL
Sbjct: 241  QTPEQFRKIIIKSDTSGANVFLGDVARVELGSESYAVESLYNGKPASGIAIKLATGANAL 300

Query: 301  DTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQ 360
            DTA A+RA++ ++ PFFP+GL +VYPYDTTPFV+ SI  VV TL+EAI+LVF++MYLFLQ
Sbjct: 301  DTAEAVRAKVEELRPFFPAGLDVVYPYDTTPFVEKSIEGVVHTLLEAIVLVFVIMYLFLQ 360

Query: 361  NFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420
            NFRATLIPTIAVPVVLLGTFA+L+A GFSINTLTMF MVLAIGLLVDDAIVVVENVERVM
Sbjct: 361  NFRATLIPTIAVPVVLLGTFAILSATGFSINTLTMFAMVLAIGLLVDDAIVVVENVERVM 420

Query: 421  AEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMAL 480
            AEEGL P EATRKSM QI GALVGI + LSAVFVPMAF  GSTG IYRQFSITIVSAMAL
Sbjct: 421  AEEGLSPLEATRKSMDQITGALVGIGLTLSAVFVPMAFMSGSTGVIYRQFSITIVSAMAL 480

Query: 481  SVLVALILTPALCATMLKPIAKGDHGEGKKGFFGWFNRMFEKSTHHYTDSVGGILRSTGR 540
            SVLVALILTPALCATMLKP+ KG HG  + GFFGWFNR F++ T+ Y  SV GI++ + R
Sbjct: 481  SVLVALILTPALCATMLKPLKKG-HGHIETGFFGWFNRGFDRLTNRYESSVAGIIKRSFR 539

Query: 541  YLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTMVQLPAGATQERTQKVLNEVTHYYLT 600
             +++Y  +VV + ++F+R+P++FLPDEDQG+  T   LP  +TQE T KVL +V+ +YL 
Sbjct: 540  VMMIYAALVVAVGWIFMRMPTAFLPDEDQGILFTQAILPTNSTQESTLKVLEKVSDHYLA 599

Query: 601  KEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWADRPGEENKVEAITMRATRAFSQIKD 660
            +E   V SVF+V GF FAG+GQN GIAFV LKDW++R      V++I  RA   FSQ+K+
Sbjct: 600  EE--GVRSVFSVAGFSFAGQGQNMGIAFVGLKDWSEREAPGMDVQSIAGRAMGVFSQMKE 657

Query: 661  AMVFAFNLPAIVELGTATGFDFELIDQAGLGHEKLTQARNQLLAEAAKHPDMLTSVRPNG 720
            A VFAF  PA++ELGTA GFD  L D+ G GH+KL  ARNQLL  AA++P+ L  VRPNG
Sbjct: 658  AFVFAFVPPAVIELGTANGFDMYLQDKNGQGHDKLVAARNQLLGMAAQNPN-LVGVRPNG 716

Query: 721  LEDTPQFKIDIDQEKAQALGVSINDINTTLGAAWGGSYVNDFIDRGRVKKVYVMSEAKYR 780
             ED P +++ ID  K  ALG+ I ++N+ L  AWGGSYVNDFIDRGRVKKVYV  +A+YR
Sbjct: 717  QEDAPIYQLHIDHAKLSALGIEIANVNSVLATAWGGSYVNDFIDRGRVKKVYVQGDAQYR 776

Query: 781  MLPDDIGDWYVRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEA 840
            M P+D+  WYVR   G MVPFSAF++  WEYGSPRLER+NGLP+M I G  APG STG A
Sbjct: 777  MQPEDLDTWYVRNNKGDMVPFSAFATGAWEYGSPRLERFNGLPAMNIQGATAPGFSTGAA 836

Query: 841  MELMEQLASKLPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLAALYESWSIPFS 900
            M +ME +  +LP G G +W G+SY+ERLSGNQAP+LYA+S++VVFL LAALYESWS+PF+
Sbjct: 837  MNIMEDMVKQLPPGFGIEWNGLSYEERLSGNQAPALYALSILVVFLVLAALYESWSVPFA 896

Query: 901  VMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGL 960
            V+LVVPLG+IGALLA   RGL NDV+FQVGLLTT+GL+ KNAILIVEFAK+  +K G GL
Sbjct: 897  VILVVPLGIIGALLAMNGRGLPNDVFFQVGLLTTVGLATKNAILIVEFAKEFYEK-GAGL 955

Query: 961  IEATLDAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAIF 1020
            IEATL AVR+RLRPILMTSLAF LGV+PL ISTG GSG+QNA+GTGV+GGM+++T L IF
Sbjct: 956  IEATLHAVRVRLRPILMTSLAFGLGVVPLAISTGVGSGSQNAIGTGVLGGMMSSTFLGIF 1015

Query: 1021 FVPVFFVVVRRRFSRKNE 1038
            FVP+FFV+V R FS++ +
Sbjct: 1016 FVPLFFVIVERIFSKREK 1033



 Score = 51.6 bits (122), Expect = 3e-10
 Identities = 56/232 (24%), Positives = 102/232 (43%), Gaps = 13/232 (5%)

Query: 819  YNGLPSMEILGQAAPGKS---TGEAMEL-MEQLASKLPTGVG----YDWTGMSYQERLSG 870
            YNG P+  I  + A G +   T EA+   +E+L    P G+     YD T    ++ + G
Sbjct: 281  YNGKPASGIAIKLATGANALDTAEAVRAKVEELRPFFPAGLDVVYPYDTTPF-VEKSIEG 339

Query: 871  NQAPSLYAISLIVVFLCLAAL-YESWSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQV 929
                 L AI L+ V + L    + +  IP   + VV LG   A+L+AT  G + +     
Sbjct: 340  VVHTLLEAIVLVFVIMYLFLQNFRATLIPTIAVPVVLLGTF-AILSAT--GFSINTLTMF 396

Query: 930  GLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLDAVRMRLRPILMTSLAFILGVMPL 989
             ++  IGL   +AI++VE  + +M +EG   +EAT  ++      ++   L      +P+
Sbjct: 397  AMVLAIGLLVDDAIVVVENVERVMAEEGLSPLEATRKSMDQITGALVGIGLTLSAVFVPM 456

Query: 990  VISTGAGSGAQNAVGTGVMGGMVTATVLAIFFVPVFFVVVRRRFSRKNEDIE 1041
               +G+           ++  M  + ++A+   P     + +   + +  IE
Sbjct: 457  AFMSGSTGVIYRQFSITIVSAMALSVLVALILTPALCATMLKPLKKGHGHIE 508