Pairwise Alignments

Query, 491 a.a., muropeptide transporter (NCBI) from Escherichia coli BW25113

Subject, 519 a.a., AmpG permease from Pseudomonas fluorescens FW300-N2E2

 Score =  158 bits (400), Expect = 4e-43
 Identities = 91/256 (35%), Positives = 141/256 (55%), Gaps = 21/256 (8%)

Query: 6   LRIFQQPRSAILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFFSLVGQAYVFKFLW 65
           L  +  P + +LL+LGFA+GLP  L   TL  W+    +  +TIG+ SL+G AY FK++W
Sbjct: 10  LAAYASPSTLVLLLLGFAAGLPYMLVFSTLSVWLREAGVARETIGYASLIGLAYAFKWVW 69

Query: 66  SPLMDRYTPPFFG---RRRGWLLATQILLLVAIAAMGFLEPGTQLRWMAALAVVIAFCSA 122
           SPL+D++  P  G   RRR WL+ +Q L+++ +  MGF +P   L W+ A+AV++AF SA
Sbjct: 70  SPLLDQWRLPLLGKLGRRRSWLVLSQGLVILGLVGMGFCDPQKHLSWLIAIAVIVAFASA 129

Query: 123 SQDIVFDAWKTDVLPAEERGAGAAISVLGYRLGMLVSGGLALWLAD---------KWLGW 173
           +QDI  DA++ ++     + A AA  + GYR+  L++   AL+ A+         K   W
Sbjct: 130 TQDIAVDAYRLEIADDTRQAALAASYMSGYRIAALLATAGALFFAEGFGSTGFSYKHSAW 189

Query: 174 QGMYWLMAALLIPCIIATLLAPEPTDTIPVP-KTLEQAVVAPLRDFFGRNNAWLILLLIV 232
            G Y L   L++P ++ +L   EP    PVP +T  QA     R  F    A + +L+++
Sbjct: 190 AGTYLLFGVLMVPALLTSLFMREP----PVPLRTQLQAG----RYSFAHQLASVFVLIVL 241

Query: 233 LYKLGDAFAMSLTTTF 248
           L  +   F     T F
Sbjct: 242 LVSVPAMFTQLYNTDF 257



 Score =  105 bits (263), Expect = 3e-27
 Identities = 65/191 (34%), Positives = 101/191 (52%), Gaps = 3/191 (1%)

Query: 211 VVAPLRDFFGRNN--AWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGVVNKTLG 268
           V+ P+ DF  R    A L+L LI  Y++ D     +   F I   GF   ++  V+K  G
Sbjct: 302 VLTPVNDFILRYRWQALLLLGLIATYRMSDTVMGVMANVFYI-DQGFTKDQIASVSKIFG 360

Query: 269 LLATIVGALYGGILMQRLSLFRALLIFGILQGASNAGYWLLSITDKHLYSMGAAVFFENL 328
           L+ T+VGA  GG+L+ R  +   L I G+    +N  + +L+    +L  +   +  +N 
Sbjct: 361 LIMTLVGAGMGGLLIVRFGILPILFIGGVASAGTNILFLMLTDMGANLKMLIVTISLDNF 420

Query: 329 CGGMGTSAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWSTFYLFS 388
             G+ TSAFVA L +L N  FSATQ+ALLS++  +    +G  +G  VE  G+  F+L +
Sbjct: 421 SSGLATSAFVAYLSSLTNLKFSATQYALLSSIMLLLPRLIGGYSGVMVEKFGYHNFFLIT 480

Query: 389 VAAAVPGLILL 399
               VP L+L+
Sbjct: 481 ALLGVPTLLLI 491