Pairwise Alignments

Query, 454 a.a., putative transport protein (VIMSS) from Escherichia coli BW25113

Subject, 385 a.a., membrane protein from Burkholderia phytofirmans PsJN

 Score =  311 bits (798), Expect = 2e-89
 Identities = 159/388 (40%), Positives = 248/388 (63%), Gaps = 7/388 (1%)

Query: 6   MTPGERRATWGLGTVFSLRMLGMFMVLPVLTTYGMALQGASEAL-IGIAIGIYGLTQAVF 64
           M+  E RAT  L  +F+LRMLG+FM++PV + Y   + G    L +GIA+G YG+TQ++ 
Sbjct: 1   MSAPELRATVSLAAIFALRMLGLFMIMPVFSIYAKTIPGGDNVLLVGIALGAYGVTQSML 60

Query: 65  QIPFGLLSDRIGRKPLIVGGLAVFAAGSVIAALSDSIWGIILGRALQGSGAIAAAVMALL 124
            I +G +SD++GRKP+I  GL +FA GS +AA +  +  II+GR +QG GA+++AV+A +
Sbjct: 61  YIFYGWVSDKVGRKPVIATGLLIFALGSFVAAGAHDMTWIIVGRVIQGMGAVSSAVIAFI 120

Query: 125 SDLTREQNRTKAMAFIGVSFGITFAIAMVLGPIITHKLGLHALFWMIAILATTGIALTIW 184
           +DLT E++RTKAMA +G S G++FA+A+V  PI+   +G+  LF ++ I +   I + +W
Sbjct: 121 ADLTSEEHRTKAMAMVGGSIGVSFAVAIVGAPIVFQWVGMSGLFTLVGIFSILAIGVVLW 180

Query: 185 VVPNSSTHVLNRESGMVKGSFSKVLAEPRLLKLNFGIMCLHILLMSTFVALPGQLADAGF 244
           +VP++   V       V+  F++VL    LL+LNFG++ LH    + F+ +P  L   G 
Sbjct: 181 IVPDAPKPV------HVRAPFAEVLHNVELLRLNFGVLVLHATQTALFLVVPRILEAGGL 234

Query: 245 PAAEHWKVYLATMLIAFGSVVPFIIYAEVKRKMKQVFVFCVGLIVVAEIVLWNAQTQFWQ 304
           P A HWKVYL  M ++F  +VP II AE + KMK V +  + LI++ +++L  A      
Sbjct: 235 PVASHWKVYLPVMGLSFVMMVPAIIAAEKRGKMKIVLLSAIALILIGQLLLGVAPHTILS 294

Query: 305 LVVGVQLFFVAFNLMEALLPSLISKESPAGYKGTAMGVYSTSQFLGVAIGGSLGGWINGM 364
           +   + ++F+ FN++EA  PSL+SK +P   KG A GVY+T+Q +G+A+GG +GGW+  +
Sbjct: 295 VAAILFVYFLGFNILEASQPSLVSKLAPGTRKGAAAGVYNTTQSIGLALGGVVGGWLLKV 354

Query: 365 FDGQGVFLAGAMLAAVWLTVASTMKEPP 392
                VF   + L   WL +A+ MK+PP
Sbjct: 355 DGQSAVFFTCSGLVLCWLIIAAKMKQPP 382