Pairwise Alignments

Query, 139 a.a., transcription antitermination protein NusB (NCBI) from Escherichia coli BW25113

Subject, 159 a.a., NusB antitermination factor (RefSeq) from Dinoroseobacter shibae DFL-12

 Score = 47.8 bits (112), Expect = 7e-11
 Identities = 44/147 (29%), Positives = 68/147 (46%), Gaps = 12/147 (8%)

Query: 2   KPAARRRARECAVQALYSWQLSQNDIADVEYQF--------LAEQDVKDVDVLYFRELLA 53
           K  A+  AR  AVQAL+  + +      V  +F          E ++ +  V  FR  + 
Sbjct: 11  KRQAKSAARLYAVQALFQMEAAGQSADSVIREFEDHRFGAIYEEGEMAEGHVTLFRTTVG 70

Query: 54  GVATNTAYLDGLMKPYLSRL--LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELA 111
                 A +D L    L+    ++ +    +A+ R A  EL  R+D P KV INE ++LA
Sbjct: 71  EAVNWQAKIDQLTDRALATAWPIDRIDPTLRALFRAAGAELV-RADTPPKVVINEYVDLA 129

Query: 112 KSFGAEDSH-KFVNGVLDKAAPVIRPN 137
           ++F  +    KFVN VLD  A   +P+
Sbjct: 130 RAFFPDGKEPKFVNAVLDHMAREAKPD 156