Pairwise Alignments

Query, 139 a.a., transcription antitermination protein NusB (NCBI) from Escherichia coli BW25113

Subject, 260 a.a., putative nitrogen utilization substance protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 41.6 bits (96), Expect = 9e-09
 Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 1/88 (1%)

Query: 42  DVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPY 100
           D D  + R L      N  Y   L+        L+ +  ++  +++ AL E+    ++P 
Sbjct: 158 DEDQEFARRLFRRTILNADYYRHLVSENTKNWDLDRIAFMDIIIMQTALAEILSFPNIPV 217

Query: 101 KVAINEAIELAKSFGAEDSHKFVNGVLD 128
            V++NE +E+AK +    S  F+NG LD
Sbjct: 218 SVSLNEYVEIAKLYSTAKSGSFINGTLD 245