Pairwise Alignments

Query, 400 a.a., exonuclease, dsDNA, ATP-dependent (NCBI) from Escherichia coli BW25113

Subject, 411 a.a., exonuclease SbcD from Pseudomonas stutzeri RCH2

 Score =  186 bits (472), Expect = 1e-51
 Identities = 128/416 (30%), Positives = 203/416 (48%), Gaps = 26/416 (6%)

Query: 1   MRILHTSDWHLGQNFYSKSREAEHQAFLDWLLETAQTHQVDAIIVAGDVFDTGSPPSYAR 60
           MR++HTSDWHLGQ  + + R+ EH  FL WLL+    H+ DA+++AGDVFDT +PP  A+
Sbjct: 1   MRLIHTSDWHLGQTLHGQDRDYEHAQFLAWLLDQLVAHRADALLIAGDVFDTVNPPLKAQ 60

Query: 61  TLYNRFVVNLQQ--TGCHLVVLAGNHDSVATLNESRDIMAFLNTTVV--------ASAGH 110
                F+V   +      +V++AGNHDS   +     +M  LN   V            H
Sbjct: 61  ERLYDFIVRTHEKLPQLDIVMIAGNHDSGGRIELPAPLMKRLNAHAVGRISWVAEGQLDH 120

Query: 111 APQILPRRD--GTPGAVLCPIPFLRPRDIITSQAGLNGIEKQQHLLAAITDYYQQHYADA 168
              ++P  D  G   A    +PFLRP ++        G+E     +A I   +++  A A
Sbjct: 121 QRLLVPLHDANGNTAAWCLTLPFLRPAEV-------TGMELGDDYMAGIRQVHERLIAAA 173

Query: 169 CKLR-GDQPLPIIATGHLTTVGASKSDAVRDIYIGTLDAFPAQNFPPA-DYIALGHIHRA 226
              R   Q L  ++  H+   GA   ++ R+I IG  +A PA  FP +  Y+ALGH+H+ 
Sbjct: 174 ETARQPGQALVAMSHAHMAG-GAVSEESERNIVIGNAEALPASLFPESVAYVALGHLHKP 232

Query: 227 QIIGGMEHVRYCGSPIPLSFDECGKSKYVHLVTFSNGKLESVENLNVP-VTQPMAVLKGD 285
           Q + G   +RY GSP+PLSF E      V LV     +L++VE L VP   + + + +  
Sbjct: 233 QQVAGQARIRYSGSPLPLSFAEVNYPHQVLLVELDGDQLKNVEQLPVPRAVEMIRIGRAS 292

Query: 286 LASITAQLEQW--RDVSQEPPVWLDIEITTDEYLHDIQRKIQALTESLPVEVLLVRRSRE 343
           LA + A LE      +  +   WL++ +  DE L D++++I+         ++ +     
Sbjct: 293 LAEVIAALEALPPTGLFDDNLPWLEVRVLLDEPLPDLRQRIETAITGKACRLVRIASEYA 352

Query: 344 QRERVLASQQRETLSELSVEEVFNRRLALEELDESQQQRLQHLFTTTLHTLAGEHE 399
            +     S+    L ++S +E+F R    +  + + +Q L   F T L  +   HE
Sbjct: 353 GKRGEAESEVLLGLDQISPQELFARAWEEQYGNPADEQALDD-FATLLQRVEFAHE 407