Pairwise Alignments

Query, 1048 a.a., exonuclease, dsDNA, ATP-dependent (NCBI) from Escherichia coli BW25113

Subject, 1013 a.a., nuclease SbcCD subunit C from Vibrio cholerae E7946 ATCC 55056

 Score =  291 bits (745), Expect = 2e-82
 Identities = 304/1084 (28%), Positives = 488/1084 (45%), Gaps = 138/1084 (12%)

Query: 1    MKILSLRLKNLNSLKGEWKIDFTREPFASNGLFAITGPTGAGKTTLLDAICLALYHETPR 60
            M+ L L L+      G  +IDFT+       LF I G TGAGK+++LDAIC ALY ET  
Sbjct: 1    MRPLKLILQAFGPFAGREEIDFTK--LGDAPLFLINGATGAGKSSILDAICYALYGETTG 58

Query: 61   LSNVSQSQNDLMTRDTA--ECLAEV--EFEVKGEAYRAFWSQNRARNQPDGNLQVPRVE- 115
                S+   D M  D A  E L EV  EFE+ G  Y+          QPD  +   R E 
Sbjct: 59   ----SERTGDQMRCDYAAPESLTEVIFEFELAGARYQI-------TRQPDQEIPKKRGEG 107

Query: 116  ----------LARCADG-KILADKVKDKLELTATLTGLDYGRFTRSMLLSQGQFAAFLNA 164
                      +A  +DG +++A+K     +    L GLD  +F + M+L QG+F   L A
Sbjct: 108  MTKKSHSATLVALKSDGNELIANKPNPVAKAVVELMGLDVKQFRQVMVLPQGKFRELLTA 167

Query: 165  KPKERAELLEELTGTEIYGQISAMVFEQHKSARTELEKLQAQASG----VTLLTPEQVQS 220
              KER ++  +L  T++Y QI   +FE+    R E E+   Q  G    V L + EQ+Q+
Sbjct: 168  NSKEREQIFGQLFQTQLYSQIERALFERAAGIRKEKEEFDQQIKGTLSVVGLESEEQLQT 227

Query: 221  -LTASLQVLTDEEKQLITAQQQEQQSLNWLTRQDELQQEASRRQQALQQALAEEEKAQPQ 279
             LT    VLT  + QL   QQQ  ++        EL+Q+  R+QQ + +    +E+A   
Sbjct: 228  ELTELAPVLTHAQSQLKAEQQQWDETKAHYQAALELEQQFIRKQQLVVEIATHQEQA--- 284

Query: 280  LAALSLAQPARNLRPHWERIAEHSAALAHIRQQIEEVNTRLQST---MALRASIRHHAAK 336
                +  +  R  R      A+ +A L  + QQ  +    LQ     +  + ++   A  
Sbjct: 285  ----THIEMLRQQRQQ----AQKAARLTAVHQQWHQAQKNLQQAKLKVEQQQTLLQQAKA 336

Query: 337  QSAELQQQQQSLNTWLQEHDRFRQWNNEPAGWRAQFSQQTSDREHLRQWQQQLTHAEQKL 396
            Q  + QQ  Q  +   +E  +    N +   W+ +  Q+   +E++   QQ +  AE++L
Sbjct: 337  QQQQAQQASQQASLACEEVPKL---NEQRITWQ-RAEQKLLAQENV---QQAVAKAEREL 389

Query: 397  NALA--AITLTLTADEVATALA-QHAEQRPLRQHLVALHGQIVPQQKRLAQLQVAIQN-- 451
                  A+ L   ++++   L  Q  E    ++ L  L  Q     + + Q+Q   +   
Sbjct: 390  QLATQNALNLQQASEKLEQELQNQRLEWEQQQRQLTRLEVQKARMNQLVQQVQAREREQS 449

Query: 452  -VTQEQTQRNAALNEMRQRYKEKTQQLADVKTICEQEARIKTLEAQRAQLQAGQ--PCPL 508
             + + QT + A L   +Q +  +TQ      T  + E    T  A    L   Q  PCP+
Sbjct: 450  LLNELQTAQQALLRFEQQHHHIQTQAEQAKLTADKLEFAWHTQRAAELALALTQNEPCPV 509

Query: 509  CGSTSHPAVEAYQALEPGVNQSRLLALENEVKKLGEEGATLRGQLDAITK-QLQRDENEA 567
            CGS  HP    Y                                 D +TK Q+++   + 
Sbjct: 510  CGSLEHPNKAQYSG-------------------------------DVVTKVQVEQARQQQ 538

Query: 568  QSLRQDEQALTQQWQAVTASLNITLQPLDDIQPWLDAQDEHERQLRLLSQRHELQGQIAA 627
            Q   Q +Q     WQ          Q L  +   L  Q        L+ Q+  L   IAA
Sbjct: 539  QDWVQRQQEAFHAWQQQGFKTEQIAQNLTTLSSELTLQQVALLN-ELIEQQQILHSDIAA 597

Query: 628  HNQQIIQY-QQQIEQRQQLLLTTLTGYALTLPQEDEEESWLATRQQEAQSWQQRQNELTA 686
              Q      ++QIE+ +Q L  T     +TL ++++ +      QQ  Q+  Q Q EL +
Sbjct: 598  LQQLNPDLLKRQIEEGEQRLAHT----KMTLEKQNQNQ------QQAWQTLAQLQAELAS 647

Query: 687  LQNRIQQLTPILETLPQSD-------ELPHCEETVVLENWRQVHEQCLALHSQQQTLQQQ 739
            L+  I      L+TL  +        E+    E    E W Q  +Q  ++ +  Q   + 
Sbjct: 648  LRQEIPPELSDLDTLRSAIGRVQNQIEILQKAEHTAREQWVQAQKQFASVQAAYQAAIEA 707

Query: 740  DVLAAQSLQKAQAQFDTALQASVFDDQQAFLAALMDEQTLTQLEQLKQNLENQRRQAQTL 799
               + +  ++  + +   L  S F D+ A+LAA + ++ +  +E  +Q  + + R A   
Sbjct: 708  HRESQRQQEETTSAWQQGLLHSGFSDESAYLAARLTDEAIVNIE--RQIAQYEERSAMLS 765

Query: 800  VTQTAETLAQHQQHRPDDGLALTVTVEQIQQELAQTHQKLRENTTSQGEIRQQLKQDADN 859
              Q A +    +++RP+    L V V Q ++++A   Q   ++ +    +++  KQ AD 
Sbjct: 766  GEQQALSRKLAEKNRPELE-PLLVKVTQAEEKMALALQAFTQHQSRMDGLQRVAKQLADL 824

Query: 860  RQQQQTLMQQIAQMTQQVEDWGYLNSLIGSKEGDK--FRKFAQGLTLDNLVHLANQQLTR 917
             Q+ + L  +   +       G L+ +   K G K    +F  G+ LD+++  A+Q+L +
Sbjct: 825  YQKNRALEAEYQVV-------GTLSDIANGKTGAKVSLHRFVLGVLLDDVLLQASQRLMK 877

Query: 918  L-HGRYLLQRKASEA-------LEVEVVDTWQADAVRDTRTLSGGESFLVSLALALALSD 969
            +  GRYLL+RK   A       L++ V D++     RD  TLSGGESF+ +L+LAL LSD
Sbjct: 878  MSRGRYLLKRKEERAKGNVGSGLDLMVEDSYSGKW-RDVATLSGGESFMAALSLALGLSD 936

Query: 970  LV---SHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIPV 1026
            +V   S   R+D+LF+DEGFG+LD E+LD A+  L  L   G+TIG+ISHV  +KE+I +
Sbjct: 937  VVQAYSGGIRLDTLFIDEGFGSLDPESLDLAIQTLIDLQQGGRTIGIISHVTELKEQIGL 996

Query: 1027 QIKV 1030
            ++ V
Sbjct: 997  RLDV 1000