Pairwise Alignments

Query, 362 a.a., predicted DNA-binding transcriptional regulator (NCBI) from Escherichia coli BW25113

Subject, 515 a.a., rtn protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  170 bits (431), Expect = 7e-47
 Identities = 95/246 (38%), Positives = 142/246 (57%), Gaps = 7/246 (2%)

Query: 113 ISLALENHEFKPWIQPVFCAQTGVLTGCEVLVRWEHPQTGIIPPDQFIPLAESSGLIVIM 172
           I   +EN EF    QP+  +  G   G E LVRW+HPQ G++ PD FIP+AE S LIV +
Sbjct: 271 IKSGIENQEFFLVYQPIVSSDDGKAKGVEALVRWQHPQMGLVRPDLFIPIAEQSQLIVPL 330

Query: 173 TRQLMKQT-ADILMPVKHLLPDNFHIGINVSAGCFLAAGFEKECLNLVNKLGNDKIKLVL 231
           T  + ++  AD     K  +   F IG NV+   F+ +  E +   L +      ++ ++
Sbjct: 331 TNYIFERALADFS---KLSVDSGFRIGFNVAPEHFIQSDIEAKFRYLKDAFARIGVQPLI 387

Query: 232 ELTERNPIPVTPEARAIFDSLHQHNITFALDDFGTGYATYRYLQAFPVDFIKIDKSFVQM 291
           E+TER  +  T +      +L + +I  A+DDFGTG  T   LQ F +D++KIDK F+  
Sbjct: 388 EITERQLL--TADMCERITALRELDILVAIDDFGTGQTTLSLLQTFTLDYLKIDKCFIDT 445

Query: 292 ASVDEISGHIVDNIVELARKPGLSIVAEGVETQEQADLMIGKGVHFLQGYLYSPPVPGNK 351
              D ++ H++D I+EL  K     VAEGVETQ+QAD +I + VHFLQGYL++ P+  ++
Sbjct: 446 IGQDSVTSHVLDTIIELCHKMNYVAVAEGVETQQQADYLISRDVHFLQGYLFAKPMKLDE 505

Query: 352 FISEWV 357
            +S W+
Sbjct: 506 -LSHWL 510