Pairwise Alignments

Query, 384 a.a., CP4-6 prophage; predicted DNA-binding transcriptional regulator (NCBI) from Escherichia coli BW25113

Subject, 390 a.a., transposase from Sinorhizobium meliloti 1021

 Score =  361 bits (927), Expect = e-104
 Identities = 188/375 (50%), Positives = 230/375 (61%), Gaps = 4/375 (1%)

Query: 5   MPWDARDTMSLRTEFVLFASQDGANIRSLCRRFGISPATGYKWLQRWAQEGAAGLQDRPR 64
           MPW    TM  R EFV  A ++G N R LCRRFGISP  GYKWL RW + G   L DR R
Sbjct: 1   MPWREVSTMGERREFVRLALEEGVNRRELCRRFGISPDIGYKWLARW-EAGDRELADRSR 59

Query: 65  IPHHSPNRSSDDITALLRMAHDRHERWGARKIKRWLEDQGHTMPAFSTVHNLMARHGLLP 124
            PH SP R ++ +   +    D H  WGARKI  +LE QG   PA STVH ++ RH  + 
Sbjct: 60  RPHISPMRCNEAVETEVLGVRDAHPAWGARKIVGYLERQGTHPPAVSTVHAILKRHDRIV 119

Query: 125 GASPGIPATGRFEHDAPNRLWQMDFKGHFPFGGGR-CHPLTLLDDHSRFSLCLAHCTDER 183
               G PA  RFE +APN+LWQMDFKG         CHPLT++DDHSRF  CL  C D+R
Sbjct: 120 APPGGAPALQRFEKEAPNQLWQMDFKGWVQLADATLCHPLTVIDDHSRFVPCLMACADQR 179

Query: 184 RETVQQQLVSVFERYGLPDRMTMDNGSPWGDTTGT-WTALELWLMRLGIRVGHSRPYHPQ 242
             TV+  L   F RYGLPD M +DNG+PWGD +G  WT L +WL++LG+ + HSRPYHPQ
Sbjct: 180 GATVRGHLERTFRRYGLPDAMFVDNGAPWGDPSGEGWTGLGVWLLKLGVALLHSRPYHPQ 239

Query: 243 TQGKLERFHRSLKAEVLQGKWFADSGELQRAFDHWRTVYNLERPHEALDMAVPGSRYQPS 302
           ++GK ERFHR+LKAEV     F D   +QRAFD WR +YN ERPH ALD  VP SRY PS
Sbjct: 240 SRGKNERFHRTLKAEVFAFDRFRDLAAVQRAFDAWRELYNFERPHGALDHDVPASRYHPS 299

Query: 303 ARQYSGNTTPPEYDEGVMVRKVDIS-GKLSVKGVSLSAGKAFRGERVGLKEMQEDGSYEV 361
            R        P YDEG +VRKV  +   +S KG      KAF GER+ ++ +  DG Y  
Sbjct: 300 PRAMPDRLPEPVYDEGEIVRKVSATKAYVSFKGRLWKVPKAFCGERLAIRPLDRDGHYGA 359

Query: 362 WWYSTKVGVIDLKKK 376
           ++ +  +  I+L  K
Sbjct: 360 FFGAHHIATINLTNK 374