Pairwise Alignments

Query, 384 a.a., CP4-6 prophage; predicted DNA-binding transcriptional regulator (NCBI) from Escherichia coli BW25113

Subject, 347 a.a., hypothetical protein from Sinorhizobium meliloti 1021

 Score =  283 bits (723), Expect = 7e-81
 Identities = 162/335 (48%), Positives = 200/335 (59%), Gaps = 19/335 (5%)

Query: 55  GAAGLQDRPRIPHH--SPNRSSDDITALLRMAHDRHERWGAR--------KIKRWLEDQG 104
           GA G + RPR+     +P   SD   AL R   DR   WGAR        KI  +LE QG
Sbjct: 3   GAVGSR-RPRVGGSLTAPAYKSD---ALQRSGRDRGA-WGARCASGMGARKIVGYLERQG 57

Query: 105 HTMPAFSTVHNLMARHGLLPGASPGIPATGRFEHDAPNRLWQMDFKGHFPFGGGR-CHPL 163
            T PA STVH ++ RH  +     G PA  RFE +APN+LWQMDFKG         CHPL
Sbjct: 58  -THPAVSTVHAILKRHDRIVAPPGGAPALQRFEKEAPNQLWQMDFKGWVQLADATLCHPL 116

Query: 164 TLLDDHSRFSLCLAHCTDERRETVQQQLVSVFERYGLPDRMTMDNGSPWGDTTGT-WTAL 222
           T++DDHSRF  CL  C D+R  TV+  L   F RYGLPD M +DNG+PWGD +G  WT L
Sbjct: 117 TVIDDHSRFVPCLMACADQRGATVRGHLERTFRRYGLPDAMFVDNGAPWGDPSGEGWTGL 176

Query: 223 ELWLMRLGIRVGHSRPYHPQTQGKLERFHRSLKAEVLQGKWFADSGELQRAFDHWRTVYN 282
            +WL++LG+ + HSRPYHPQ++GK ERFHR+LKAEV     F D   +QRAFD WR +YN
Sbjct: 177 GVWLLKLGVALLHSRPYHPQSRGKNERFHRTLKAEVFAFDRFRDLAAVQRAFDAWRELYN 236

Query: 283 LERPHEALDMAVPGSRYQPSARQYSGNTTPPEYDEGVMVRKVDIS-GKLSVKGVSLSAGK 341
            ERPH ALD  VP SRY PS R        P YDEG +VRKV  +   +S KG      K
Sbjct: 237 FERPHGALDHDVPASRYHPSPRAMPDRLPEPVYDEGEIVRKVSATKAYVSFKGRLWKVPK 296

Query: 342 AFRGERVGLKEMQEDGSYEVWWYSTKVGVIDLKKK 376
           AF GER+ ++ +  DG Y  ++ +  +  I+L  K
Sbjct: 297 AFCGERLAIRPLDRDGHYGAFFGAHHIATINLTNK 331