Pairwise Alignments

Query, 384 a.a., CP4-6 prophage; predicted DNA-binding transcriptional regulator (NCBI) from Escherichia coli BW25113

Subject, 389 a.a., IS481-like element ISRpa3 family transposase from Rhodopseudomonas palustris CGA009

 Score =  358 bits (920), Expect = e-103
 Identities = 186/372 (50%), Positives = 229/372 (61%), Gaps = 5/372 (1%)

Query: 5   MPWDARDTMSLRTEFVLFASQDGANIRSLCRRFGISPATGYKWLQRWAQEGAAGLQDRPR 64
           MPW     +  R EFV  A Q+GAN R LCRRFGI   TGYKWL+R A  G   + D  R
Sbjct: 1   MPWREVSAVDQRREFVRLAMQEGANRRELCRRFGIHWTTGYKWLERCAAGG--DVVDLSR 58

Query: 65  IPHHSPNRSSDDITALLRMAHDRHERWGARKIKRWLEDQGHTMPAFSTVHNLMARHGLLP 124
            PH SP ++S    A +    D H  WGARKI   ++  GH+ PA ST+H ++ RHG + 
Sbjct: 59  RPHESPRQTSAACEAQVLAVRDAHPAWGARKIASSMKRSGHSAPAVSTIHEILRRHGRIK 118

Query: 125 GASPGIPATGRFEHDAPNRLWQMDFKGHFPFGGG-RCHPLTLLDDHSRFSLCLAHCTDER 183
            A  G PAT RFE  APN LWQMDFKG    G   RCHPLT++DDHSR+ LCL  C D+R
Sbjct: 119 SAGGGPPATLRFEMPAPNMLWQMDFKGWVRLGNDVRCHPLTVVDDHSRYDLCLQACADQR 178

Query: 184 RETVQQQLVSVFERYGLPDRMTMDNGSPWGDTTGT-WTALELWLMRLGIRVGHSRPYHPQ 242
            ETVQ +L + F  YGLPD + +DNGSPW D++G  WT   +WL++LGI V  SRPYHPQ
Sbjct: 179 GETVQDRLQTTFRHYGLPDTIFVDNGSPWSDSSGERWTWFSVWLLKLGISVIRSRPYHPQ 238

Query: 243 TQGKLERFHRSLKAEVLQGKWFADSGELQRAFDHWRTVYNLERPHEALDMAVPGSRYQPS 302
           ++GK ERFHR+L  EV   +   D  E QRAFD WR VYN ERPHE+L   VP  RYQPS
Sbjct: 239 SRGKNERFHRTLDDEVFALRPLRDLAEAQRAFDSWREVYNFERPHESLGQLVPADRYQPS 298

Query: 303 ARQYSGNTTPPEYDEGVMVRKV-DISGKLSVKGVSLSAGKAFRGERVGLKEMQEDGSYEV 361
            R        PEYDE  +VR V      +S KG      +AF GER+ ++ +  DG Y V
Sbjct: 299 RRSLPDRLPAPEYDERDIVRSVPKTKAYVSFKGRLWKVPQAFAGERLAIRPLSTDGKYGV 358

Query: 362 WWYSTKVGVIDL 373
           ++ + +V  IDL
Sbjct: 359 FFAAHQVATIDL 370