Pairwise Alignments

Query, 384 a.a., CP4-6 prophage; predicted DNA-binding transcriptional regulator (NCBI) from Escherichia coli BW25113

Subject, 269 a.a., Integrase catalytic region (RefSeq) from Dinoroseobacter shibae DFL-12

 Score = 72.8 bits (177), Expect = 1e-17
 Identities = 67/246 (27%), Positives = 96/246 (39%), Gaps = 11/246 (4%)

Query: 55  GAAGLQDRPRIPHHSPNRSSDDITALLRMAHDRHERWGARKIKRWLEDQGHTMPAFSTVH 114
           G A   DR  + + S      +  A ++       R+G R+I   LE QG  M     + 
Sbjct: 16  GKALAVDRSSVRYRSVRPDDAEARAAMKAVAAERRRFGYRRIHVMLERQG-IMMNLKKLR 74

Query: 115 NLMARHGLLPGASPGIP-ATGR----FEHDAPNRLWQMDFKGHFPFGGGRCHPLTLLDDH 169
            L     L      G   A G        DAPN+ W +DF       G +   L ++DD+
Sbjct: 75  RLYREEKLQVRRRGGRKRALGTRWPMLVPDAPNQHWSLDFVSDALTDGRQFRVLAVVDDY 134

Query: 170 SRFSLCLAHCTDERRETVQQQLVSVFERYGLPDRMTMDNGSPWGDTTGTWTALELWLMRL 229
           SR  L L   T      V ++L ++  R G P  +  DNG     T  T  A+  W  R 
Sbjct: 135 SRECLALVADTSLSGLRVVRELDALMLRRGQPAMVVSDNG-----TELTSVAVLSWCQRT 189

Query: 230 GIRVGHSRPYHPQTQGKLERFHRSLKAEVLQGKWFADSGELQRAFDHWRTVYNLERPHEA 289
           GI   +  P  P   G +E F+   + E+L    F+   + +     W+  YN  RPH  
Sbjct: 190 GIEWHYIAPGKPMQNGFVESFNGRFRDELLNESLFSSLADAREQIRAWQHDYNHHRPHSG 249

Query: 290 LDMAVP 295
           L    P
Sbjct: 250 LGNIPP 255