Pairwise Alignments

Query, 384 a.a., CP4-6 prophage; predicted DNA-binding transcriptional regulator (NCBI) from Escherichia coli BW25113

Subject, 273 a.a., Integrase catalytic region (RefSeq) from Dinoroseobacter shibae DFL-12

 Score = 63.5 bits (153), Expect = 6e-15
 Identities = 62/253 (24%), Positives = 95/253 (37%), Gaps = 12/253 (4%)

Query: 63  PRIPHHSPNRSSD-DITALLRMAHDRHERWGARKIKRWLEDQGHTMPAFSTVHNLMARHG 121
           PR+      R +D ++   ++       R+G R++   L+ +G  +  +  ++ L    G
Sbjct: 23  PRVYRRRSKRLADTELRVRMKELASERRRFGYRRLHMLLKREGWEVN-WKKLYRLYRDEG 81

Query: 122 LLPGASPGIPA-----TGRFEHDAPNRLWQMDFKGHFPFGGGRCHPLTLLDDHSRFSLCL 176
           L      G        T       PN+ W +DF       G R   L ++DD SR  L  
Sbjct: 82  LTVRKRGGRKRAVGTRTPMAIPQGPNQRWSLDFMSDALEDGRRFRVLNVIDDFSRECLAA 141

Query: 177 AHCTDERRETVQQQLVSVFERYGLPDRMTMDNGSPWGDTTGTWTALELWLMRLGIRVGHS 236
              T      V ++L  + E  G P  +  DNG     T  T  A+  W     +   + 
Sbjct: 142 VVDTSISGARVARELDRIAELRGYPCLVVSDNG-----TELTSNAMLKWQEDRKVDWHYI 196

Query: 237 RPYHPQTQGKLERFHRSLKAEVLQGKWFADSGELQRAFDHWRTVYNLERPHEALDMAVPG 296
            P  P   G +E F+  ++ E L    F       R    WR  YN  RPH +LD   P 
Sbjct: 197 APGKPMQNGLVESFNGRMREECLNEHLFPSLRHACRMIAAWRDDYNHHRPHSSLDGLTPR 256

Query: 297 SRYQPSARQYSGN 309
             +Q S    + N
Sbjct: 257 EYHQRSREDQTLN 269