Pairwise Alignments

Query, 384 a.a., CP4-6 prophage; predicted DNA-binding transcriptional regulator (NCBI) from Escherichia coli BW25113

Subject, 269 a.a., Integrase catalytic region (RefSeq) from Dinoroseobacter shibae DFL-12

 Score = 73.6 bits (179), Expect = 6e-18
 Identities = 66/240 (27%), Positives = 94/240 (39%), Gaps = 11/240 (4%)

Query: 61  DRPRIPHHSPNRSSDDITALLRMAHDRHERWGARKIKRWLEDQGHTMPAFSTVHNLMARH 120
           DR  + + S      +  A ++       R+G R+I   LE QG  M     +  L    
Sbjct: 22  DRSSVRYRSVRPDDAEARAAMKAVAAERRRFGYRRIHVMLERQG-IMMNLKKLRRLYREE 80

Query: 121 GLLPGASPGIP-ATGR----FEHDAPNRLWQMDFKGHFPFGGGRCHPLTLLDDHSRFSLC 175
            L      G   A G        DAPN+ W +DF       G R   L ++DD+SR  L 
Sbjct: 81  KLQVRRRGGRKRALGTRWPMLVPDAPNQHWSLDFVSDALTDGRRFRVLAVVDDYSRECLA 140

Query: 176 LAHCTDERRETVQQQLVSVFERYGLPDRMTMDNGSPWGDTTGTWTALELWLMRLGIRVGH 235
           L   T      V ++L ++  R G P  +  DNG     T  T  A+  W  R GI   +
Sbjct: 141 LVADTSLSGLRVVRELDALMLRRGQPAMVVSDNG-----TELTSVAVLSWCQRTGIEWHY 195

Query: 236 SRPYHPQTQGKLERFHRSLKAEVLQGKWFADSGELQRAFDHWRTVYNLERPHEALDMAVP 295
             P  P   G +E F+   + E+L    F+   + +     W+  YN  RPH  L    P
Sbjct: 196 IAPGKPMQNGFVESFNGRFRDELLNESLFSSLADAREQIRAWQHDYNHHRPHSGLGNIPP 255