Pairwise Alignments

Query, 1160 a.a., DNA polymerase III subunit alpha (NCBI) from Escherichia coli BW25113

Subject, 1110 a.a., DNA-directed DNA polymerase III PolC from Dechlorosoma suillum PS

 Score =  381 bits (979), Expect = e-109
 Identities = 327/1163 (28%), Positives = 533/1163 (45%), Gaps = 173/1163 (14%)

Query: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63
            P +  L   S++S + G +    LV++A  LG  ALA+TD  +  G V+ + A   AG+K
Sbjct: 13   PDYAELHCLSNFSFLRGASHPEELVQRAVELGYGALAVTDECSFAGSVRAHVAAKAAGLK 72

Query: 64   PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIE 123
             I G +      +L D L  L +LA N  GY NL+ LI+ A +R                
Sbjct: 73   LIHGTEI-----VLADGLK-LVLLAQNREGYGNLSALITLARRRA--------------- 111

Query: 124  LNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFY------------------EEHFPDR 165
              +G   L+ G +   G S        + +C+A +                   + FP R
Sbjct: 112  -EKGAYRLTRGDLEGFGPS------GALPDCLALWVPGPQFDSPPDPADGRWLAQRFPGR 164

Query: 166  YFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTL 225
             +L +     PD+   L    +LA   GLP++A  DV     +     ++  A+    T+
Sbjct: 165  SWLAVELHAGPDDRGRLEQLQQLAADCGLPLLAAGDVHMHSRARRPLQDVLTALRLNTTV 224

Query: 226  DDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQ--FPT 283
                   + + ++++R    +  L+   PE LA T+ +A RC  ++    Y  P+   P 
Sbjct: 225  FAAGHALHPNGERHLRPRLRLARLYP--PELLAETLAVAARCTFSLDELRYEYPEEVVPH 282

Query: 284  GDMSTEDYLVKRAKEGLEERLAFLFPDE-EERLKRRPEYDERLETELQVINQMGFPGYFL 342
            G ++   YL +  + GL  R    +PD   E+ + + EY      EL +I ++ +  YFL
Sbjct: 283  G-LTPAAYLRQEVEAGLAVR----YPDGVPEKARAQVEY------ELGLIARLQYEAYFL 331

Query: 343  IVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDF 402
             V + +++++   + +  GRGS A S V YAL IT++DP + +LLFERF++ ER   PD 
Sbjct: 332  TVYDIVRFARSREI-LCQGRGSAANSAVCYALGITEVDPAKSELLFERFISAERGEPPDI 390

Query: 403  DVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKL 462
            DVDF  ++R++VI+++   YGR+  +      T   +  +RD GR LG     +D ++  
Sbjct: 391  DVDFEHQRREEVIQYLYAKYGRERAALTGALITYRTRGALRDAGRALGFGREQIDALAG- 449

Query: 463  IPPDPGMTLAKAFEAEPQLPEIYEA------DEEVKALIDMARKLEGVTRNAGKHAGGVV 516
                   TLA  ++ + +LPE   A         V   + ++R L G  R+  +H GG V
Sbjct: 450  -------TLA-WWDRQDELPERLRAVGLDPESPRVAKWLAVSRALRGFPRHLSQHVGGFV 501

Query: 517  IAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRR 576
            I+   ++   P+      +  V Q+DK D++  GL+K D L L  L+ I  AL+M+  R 
Sbjct: 502  ISRGPLSRLVPIENAAMAERSVIQWDKDDIDALGLMKVDVLALGMLSAIRRALDMLGARD 561

Query: 577  AKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVA 636
             K    P+ +  IP + K  +DML R ++  +FQ+ESR    ++ RL+P  F D++  VA
Sbjct: 562  GK----PVRLQDIPRESKAVYDMLCRGDSLGIFQVESRAQMAMLPRLKPRQFYDLVVQVA 617

Query: 637  LFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKP----VLEPTYGIILYQEQVMQ 692
            + RPGP+Q  MV  ++ R+HG E+I         E + P    VL+ TYG+ ++QEQVMQ
Sbjct: 618  IVRPGPIQGDMVHPYLKRRHGEEKI---------EKISPAVDKVLQRTYGVPIFQEQVMQ 668

Query: 693  IAQVLSGYTLGGADMLRRAMGK-KKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKF 751
            +A V +G+T G AD LRRAM   K+   +         G ++ G+    A +IF+ ++ F
Sbjct: 669  LAVVAAGFTPGEADQLRRAMAAWKRKGGLEPFEQKLIRGMQERGLPESFARRIFEQIKGF 728

Query: 752  AGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKI 811
              YGF +SH+A++A++ Y + WLK   PA F+  ++ A          LV +  R G+ +
Sbjct: 729  GDYGFPESHAASFAILVYFSAWLKRFEPAAFLCGLLNAHPMGFYAPAQLVQDAQRHGVTV 788

Query: 812  LPPDINSGLYHFHVND---------DGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFREL 862
            LPPD+    +   + +            +  G+  I G  +   E I+ AR +G  F+ +
Sbjct: 789  LPPDVTHSAWESLLVELLPGHPPARPRTVRLGLREIAGFNQAAAERIVAARQEGP-FQSV 847

Query: 863  FDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAAL------------------------ 898
             DL AR     L R  LE+L  + A   L  HR A                         
Sbjct: 848  ADLAARAG---LQRPELERLAAANALQALAGHRRAAAWESAAVENTGQPRHHGSRSGHGQ 904

Query: 899  ----------------MNSLGDALKAA----------DQHAKAEAIGQADMFGVLAEEPE 932
                             +S+ DA  A           D+   +  I Q D+F  L   P 
Sbjct: 905  EAEQRKERGGAQAPGRRSSVSDATNATGRSKNGMDERDERVHSLPI-QGDLFAAL---PP 960

Query: 933  QIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGG--VRLKDMHPTER 990
             +E       P  E   L  +  TLGL L  HP+       +R   G  +   ++     
Sbjct: 961  PVEAPPPLPTP-TEGEDLVADYATLGLTLGRHPLALLR---DRLTAGRFITAAELRAAPD 1016

Query: 991  GKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIV 1050
             K+  AAG+V   +   T  G  I   T++D +G + V+L  + ++K ++     R+L V
Sbjct: 1017 RKLARAAGIVTHRQRPGTASG--IVFVTMEDETGPINVILRPELVEKQRRETLAARLLGV 1074

Query: 1051 SGQVSFDDFSGGLKMTAREVMDI 1073
             GQ+  +   G   + A+ ++D+
Sbjct: 1075 YGQL--ESRHGVTHLVAKRLVDL 1095