Pairwise Alignments

Query, 385 a.a., orf, hypothetical protein (VIMSS) from Escherichia coli BW25113

Subject, 410 a.a., CdaR family transcriptional regulator (RefSeq) from Shewanella sp. ANA-3

 Score =  312 bits (800), Expect = 9e-90
 Identities = 172/400 (43%), Positives = 250/400 (62%), Gaps = 23/400 (5%)

Query: 6   LDTKMAQDIVARTMRIIDTNINVMDARGRIIGSGDRERIGELHEGALLVLSQGRVVDIDD 65
           LD  +A+ IV+RTM+II  NINVM+ +G I+GSGD +RIG  HEGALL ++Q R V++ +
Sbjct: 4   LDQHIAKQIVSRTMKIIGHNINVMNGQGVILGSGDPKRIGSTHEGALLAIAQNRNVELSE 63

Query: 66  AVARHLHGVRQGINLPLRLEGEIVGVIGLTGEPENLRKYGELVCMTAEMMLEQSRLMHLL 125
            VA  L+GV+ GINLPL  +G+I+GVIG+TG+P  L  YGEL+ MTAEM++EQ+      
Sbjct: 64  EVASGLYGVKPGINLPLHYQGQIIGVIGITGDPAELTHYGELLKMTAEMIVEQANQQDQQ 123

Query: 126 AQDSRLREELVMNLIQAE-ENTPALTEWAQRLGIDLNQPRVVAIVEVDSGQLG----VDS 180
             ++R REE ++ LI+A+ ++   L  WA++L ID++ PRV AI+EV   Q        +
Sbjct: 124 QWENRQREEFILQLIKAQTDDDEQLHRWAKQLDIDISLPRVAAIIEVSEKQSAPTQHTSA 183

Query: 181 AMAEL-QQLQNA-----------------LTTPERNNLVAIVSLTEMVVLKPALNSFGRW 222
           A + L Q  QNA                 L  P+R NL+A+ S++++V+LKPA     +W
Sbjct: 184 AFSSLVQSEQNADERNPRVSEILKQVLHLLQNPDRGNLIAMTSMSQLVILKPAFLDGKQW 243

Query: 223 DAEDHRKRVEQLITRMKEYGQLRFRVSLGNYFTGPGSIARSYRTAKTTMVVGKQRMPESR 282
           D E   +R+++L+ R+     L F+++LG++F   G IARSY+TA+ T+ +GKQ  PE  
Sbjct: 244 DPELENQRIDKLLQRLPAQMDLHFKIALGHFFPEKGGIARSYQTAQETLNLGKQLNPEGT 303

Query: 283 CYFYQDLMLPVLLDSLRGDWQANELARPLARLKTMDNNGLLRRTLAAWFRHNVQPLATSK 342
            Y ++D  L VLL  L+ DW+   LA P  +L   D NG LR+TLAA+  H       + 
Sbjct: 304 KYLFEDYSLQVLLSGLKHDWRGQALASPYQQLAKADKNGQLRKTLAAYITHFGDAQQCAN 363

Query: 343 ALFIHRNTLEYRLNRISELTGLDLGNFDDRLLLYVALQLD 382
           ALFIHRNTL YRL++I +LT  D+ +    L LY+   +D
Sbjct: 364 ALFIHRNTLRYRLDKIQQLTKSDIHSLHGLLSLYLGQLID 403