Pairwise Alignments

Query, 183 a.a., N-acetyl-anhydromuranmyl-L-alanine amidase (NCBI) from Escherichia coli BW25113

Subject, 187 a.a., 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD from Pseudomonas fluorescens SBW25-INTG

 Score =  202 bits (514), Expect = 3e-57
 Identities = 100/171 (58%), Positives = 119/171 (69%), Gaps = 2/171 (1%)

Query: 6   GWLVGARRVPSPHYDCRPDDETPTLLVVHNISLPPGEFGGPWIDALFTGTIDPQAHPFFA 65
           GW  G R  PSP+++ RP  E  +LLVVHNISLPP +F    +   F   +D   HP+F 
Sbjct: 8   GWCEGIRHCPSPNFNERPTGEI-SLLVVHNISLPPAQFATGKVQEFFQNRLDVTEHPYFE 66

Query: 66  EIAHLRVSAHCLIRRDGEIVQYVPFDKRAWHAGVSQYQGRERCNDFSIGIELEGTDTLAY 125
            IA LRVSAH LI RDG + Q+V    RAWHAGVSQ++GRE CNDFS+GIELEGTD L +
Sbjct: 67  GIAALRVSAHFLIERDGTVTQFVSCLDRAWHAGVSQFEGRETCNDFSLGIELEGTDDLPF 126

Query: 126 TDAQYQQLAAVTRALIDCYPDIA-KNMTGHCDIAPDRKTDPGPAFDWARFR 175
           TDAQY  L  ++R L+  YPDI  + + GH DIAP RKTDPGPAFDW RFR
Sbjct: 127 TDAQYASLIDLSRQLLAAYPDITPQRVCGHSDIAPGRKTDPGPAFDWTRFR 177