Pairwise Alignments

Query, 400 a.a., assembly protein in type IV pilin biogenesis, transmembrane protein (NCBI) from Escherichia coli BW25113

Subject, 408 a.a., type IV pilin assembly protein PilC from Vibrio cholerae E7946 ATCC 55056

 Score =  190 bits (482), Expect = 7e-53
 Identities = 120/397 (30%), Positives = 206/397 (51%), Gaps = 16/397 (4%)

Query: 7   WRWHGITGDGNAQDGMLWAESRTLLLMALQQQMVTPLSLKR--IAINSAQWRGDKSAEVI 64
           +RW GI  +G    G + A S   +   L+ Q +    LK+  +++ +      KS ++ 
Sbjct: 12  YRWKGINSNGKKVSGQMLAISEIEVRDKLKDQHIQIKKLKKGSVSLLARLTHRVKSKDIT 71

Query: 65  ---HQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEVF 121
               QLAT+L  G+ + + L L+ + H   + +++L  +   +E G   S A+   S  F
Sbjct: 72  ILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAMRTASAHF 131

Query: 122 PPLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIMVVVAML 181
             LY  ++ TGE++G L E    LA  ++   QL  KV  AL YP +++ +A+ V   ML
Sbjct: 132 DTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVALGVSYLML 191

Query: 182 HFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWS-WLLV-----LFGFLLAIANKLLM 235
             V+PEF +++K F   LP  TQ ++ L+ +   +S W  +     +FG      N   +
Sbjct: 192 TMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYSLWAFIAIAAAIFGLKALRKNSFQI 251

Query: 236 RRPTWLIVRQKLLLRIPIMGSLMRGQKLTQIFTILALTQSAGITFLQGVESVRETMRCPY 295
           R  T      +L L+ PI+G+++    + +    LA + +AGI  L  +++  +T    +
Sbjct: 252 RLKT-----SRLGLKFPIIGNVLAKASIAKFSRTLATSFAAGIPILASLKTTAKTSGNVH 306

Query: 296 WVQLLTQIQHDISNGQPIWLALKNTGEFSPLCLQLVRTGEASGSLDLMLDNLAHHHRENT 355
           +   + ++  D + G P+++A++NT  F  + LQ+V  GE SG LD ML+ +A  +    
Sbjct: 307 FETAINEVYRDTAAGMPMYIAMRNTEAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEV 366

Query: 356 MALADNLAALLEPALLIITGGIIGTLVVAMYLPIFHL 392
               DNL  +LEP +++  G ++G LVVAMYLPIF+L
Sbjct: 367 DNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPIFNL 403