Pairwise Alignments

Query, 947 a.a., Signal transduction histidine kinase from Kangiella aquimarina DSM 16071

Subject, 1188 a.a., sensory box histidine kinase/response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  317 bits (811), Expect = 4e-90
 Identities = 212/539 (39%), Positives = 308/539 (57%), Gaps = 27/539 (5%)

Query: 283  NNLELDIARRQALEASRVKTEFLANMSHEIRTPMNGVIGFTELLLKTELNNKQKDFLFDI 342
            N + L  A++ A  A+  K+EFLANMSHEIRTPMN +IG  +L  +T L  +QKD+L   
Sbjct: 656  NEVALLEAKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTAQQKDYLEKA 715

Query: 343  KRSATSLLSIIDDILDYSKIEAGKMSFERYPFDLRECVDDIFRMLGPNANKKGIELVSLI 402
              SA SLL II+DILD+SKIEAGK+  ER PF L + +D    +    A ++G+EL  L+
Sbjct: 716  GFSAQSLLRIINDILDFSKIEAGKLELERVPFPLDKVLDHALDLNALKAQEQGVEL--LL 773

Query: 403  YSDVPKALL--GDPIRIKQIITNLVNNAIKFTKSGSVELYAEVESENKKGLKLKIQVKDS 460
            Y+ V   L+  GDP+R+ Q++ NL++NA+KFT+SG +EL  E   E    + LK  V+D+
Sbjct: 774  YAPVTAGLILKGDPLRLGQVLINLLSNAVKFTQSGEIELGCEDVGERDHRITLKFWVRDT 833

Query: 461  GIGLTQEQQRNLFKAFSQADSSTKREFGGTGLGLVISKSLVEKMGGNIGVNSNQGEGSTF 520
            GIG++++QQ  LF AF+QAD ST R++GGTGLGL ISK LV  MGG + V S  G GSTF
Sbjct: 834  GIGISKDQQEKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKMQVQSELGVGSTF 893

Query: 521  WFTLQCE-RTDALPEDGLTGEFLANKSVLVFDPHPSTRLSITQILEEWGMLVRSFE-KID 578
             FT+  E   +A  E  +  E L N   LV D +P+        L+ +  L+R F  ++D
Sbjct: 894  SFTISFEIAEEAKIEPLVVPEKLNNLRTLVVDDNPTA-------LQIYSALMRDFHFEVD 946

Query: 579  DLMTEID-LYSQSGKSIELIIIGGQRFRRRQQQLEYICNKAQTQL------YCPIITFTT 631
               +  + LY  S   I+L+++    +   +     + +   T +        PII   T
Sbjct: 947  TAASGAEALYKLSRDPIDLLLLD---WMMPEMDGSDVISAIDTMVAEGRIAKRPIIIMMT 1003

Query: 632  AGNADFLEH-LHSIGVNRAMTKPVTHRALYNSLI-ELLKTPSIHSGKEPAEAPVGDASLL 689
            A  A+ L H + S  V   + KP    +L++ +I      P ++  +  AE  V +    
Sbjct: 1004 AYAAEPLLHEVDSANVFAVLQKPFKASSLFDEIIAAFADEPRLNVVQPIAEVAVEEGE-- 1061

Query: 690  KDIYVLAVDDNPANLRLVTTLLQDLNIKVDAAESGMQAVSLSKNKVYDAILMDIQMPEMD 749
                VL V+DN  N ++ T LL+    +V  A +G  A+ +  ++ +DA+LMDIQMP MD
Sbjct: 1062 HTGLVLLVEDNFINQQVATELLKSAGYEVVVAGNGQIALDIVDSRPFDAVLMDIQMPVMD 1121

Query: 750  GLEATRTIRANRTNLNTPIIALTAHAMASEREQLLEAGMDDYMTKPVSEQALVNLLLKW 808
            GL A R +R   +    PIIA+TAHAM+ +RE+ L AGM+ ++TKP+    L   L  W
Sbjct: 1122 GLTAARALRERYSADVLPIIAMTAHAMSGDREKSLAAGMNAHITKPIVLTELFETLTHW 1180