Pairwise Alignments

Query, 279 a.a., Small-conductance mechanosensitive channel from Kangiella aquimarina DSM 16071

Subject, 494 a.a., MscS Mechanosensitive ion channel (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  190 bits (483), Expect = 5e-53
 Identities = 102/268 (38%), Positives = 154/268 (57%), Gaps = 5/268 (1%)

Query: 17  SWQVMMDYAPKVISALVVL---LVGLIIIRMIVNG-VRKAFEK-KKFDVTLQRFLVSMIG 71
           SW V  D   ++   + V+   +  L+++  IV G  R+ F K       LQ FL +++ 
Sbjct: 188 SWAVARDGGVQLAIRIAVIGGAIFALLLVARIVRGYARRMFGKLPNLSKLLQAFLATIVY 247

Query: 72  ILLKAALAITVIGMLGIQMTTFVAMLGAAGLAIGLALSGTLQNFAGGVILLILRPYRVGD 131
            L  A   + V+  LG+ +T   A+ G     +  A+  TL N A GV+++I RP+  GD
Sbjct: 248 WLTIAVGLMVVLSSLGVDITPLFALFGGGAFILAFAMQETLSNLAAGVMIMINRPFDEGD 307

Query: 132 FVEMQGHSGTVKEIQIFNTILTTPDNKTIIIPNSPISTGSMINYSTQPKRRVDFTIGIGY 191
           +V++ G  GTVK + I +T + TPDN+ I+IPNS +    + N +    RRVD   GIGY
Sbjct: 308 YVDVAGLGGTVKNVSIVSTQIVTPDNQIIVIPNSKVWGDVITNVTASDTRRVDMVFGIGY 367

Query: 192 DDDIDKARDVILGVINKDERVHKDPEPFIAVSALADSSVNFVLRVWADSADYWGVYFENL 251
            D I +A+ V+  V++    V KDP P I V+ LADS+VNF++R W  + DYW VY++  
Sbjct: 368 GDSIQEAQAVLEEVVSGHPLVLKDPAPVIRVNELADSAVNFIVRPWTKTTDYWAVYWDLQ 427

Query: 252 EAIKKALDENNISIPYPQRDVHLHTVEK 279
            A+K+A D  +ISIP+PQ D+HL+   K
Sbjct: 428 RAVKEAFDAKDISIPFPQTDMHLYMAPK 455