Pairwise Alignments

Query, 295 a.a., tyrosine recombinase XerD from Kangiella aquimarina DSM 16071

Subject, 299 a.a., integrase/recombinase XerC (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  191 bits (484), Expect = 2e-53
 Identities = 107/291 (36%), Positives = 181/291 (62%), Gaps = 5/291 (1%)

Query: 4   SIIEQFCDQIWMEQGLSDATLSSYRSDLKLFNQWLQKQGKTLTNSGASDIQQYLAERYSK 63
           S ++QF   +  E+ LS  T+ +Y  +L+   + L  +G  L N G    QQ LA+ + K
Sbjct: 7   SYLQQFEAYMQSERQLSAHTVRNYLYELQRGRELLP-EGIDLLNVGREHWQQVLAKLHRK 65

Query: 64  QYSSRSTARFLSSARKFYRYLLQSNHIKVDPTQQIESPKIQPPVPKSLSEDEVDSLLSQP 123
             S RS + +LS+ +++  +LL++  I+++P + + +PK   P+PK++  D +  LL + 
Sbjct: 66  GLSPRSLSLWLSAVKQWGEFLLRAGAIELNPAKGLSAPKQAKPLPKNIDVDSLTHLL-EI 124

Query: 124 DLDTALGLRDKAMLELLYSSGLRITELISVEMNQIGFQQGVMRVIGKGNKERIVPIGEEA 183
           D +  L LRDKA++EL YSSGLR+ EL +++++ + + Q  +RV+GKGNKERIVP+G  A
Sbjct: 125 DGNDPLTLRDKAIMELFYSSGLRLAELAALDLSSVQYDQREVRVLGKGNKERIVPVGRYA 184

Query: 184 LQAIAHYIRYGRAELSKEKVTDWLFLSTRGQRMTRQTFWHRIKFYAKTAGIRKHLSPHTL 243
           + AI+ ++   R    ++     LF++ +G+R++ ++   R+  + +   +   + PH L
Sbjct: 185 IDAISAWLECRRQIPCEDNA---LFVTEKGKRLSHRSIQARMSKWGQEQALSMRVHPHKL 241

Query: 244 RHAFATHLLNHGADLRTLQMLLGHSDLSTTQIYTYVAKERLKQLHSQHHPR 294
           RH+FATH+L   ADLR +Q LLGH +LSTTQIYT +  + L +++   HPR
Sbjct: 242 RHSFATHMLESSADLRAVQELLGHENLSTTQIYTSLDFQHLAKVYDNAHPR 292