Pairwise Alignments

Query, 528 a.a., UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13) from Kangiella aquimarina DSM 16071

Subject, 493 a.a., UDP-N-acetylmuramyl-tripeptide synthetase (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  244 bits (623), Expect = 5e-69
 Identities = 174/487 (35%), Positives = 232/487 (47%), Gaps = 32/487 (6%)

Query: 35  VNGLQLDSRQIKAGEMFVAYPGHATDGREYIQQAVDSGASVVLFEQDGSETIFKTLLNDN 94
           V GL LDSRQ+K G +F   PG    G E+IQ A+  GA  +L + +G            
Sbjct: 22  VTGLALDSRQVKEGYLFAGLPGSRVHGAEFIQYALRMGAGAILTDAEG------------ 69

Query: 95  QQVAASAKTLSGVYNYKEAVLIPVKNLSQNVSLIAARFYGNPTKKMSVIGVTGTNGKTSC 154
                 A+    V +  E  LI  ++  Q  S  AA +YG   +  +++GVTGTNGKTS 
Sbjct: 70  ------ARIARDVLDGAEVTLIVAEDPRQAFSAAAALWYG--AQPATMVGVTGTNGKTSV 121

Query: 155 AYLLAQALEFLQYPTLMLSTVGNGNPNELKATENTTPDAIAIQRLAAEYLQQKNYHMTME 214
           A    Q  + L +    + T G           +TTPD + +    AE   Q   H  ME
Sbjct: 122 ASFTRQLWQGLGHAAANIGTTGIEGDFSADLA-HTTPDPLTLHAALAEMAAQGITHAAME 180

Query: 215 VSSHGLVQSRVAAVAYKVAIFTNLSQDHLDYHGDMESYFQAKRELF--ISENLQVAVINA 272
            SSHGL Q R+  V    A FTN SQDHLDYH   E+YF AK  LF  +  +  +AVIN 
Sbjct: 181 ASSHGLDQRRLDGVRLVAAGFTNFSQDHLDYHETFEAYFAAKAGLFSRVLADQGMAVINL 240

Query: 273 DDEYGRRLLADEQISCRKIAYSCKEKNDSLNISDWVVAQNQMFNMKGIQAELHTPWGTSK 332
           DD  G  ++A    +  ++      K+  L ++       Q F+  G +          +
Sbjct: 241 DDPKGADMMAIAHGAGAELLTVGTHKDAMLRLTA------QRFDADGQEMRFTWKGVAHQ 294

Query: 333 LRSGLLGHFNLSNLLAVASALGFLFGDINKWIVALNAAKAVPGRMQSFTKAGK-ATVVVD 391
            R  L+G F  SN+L     +      +   +  L     V GRMQ   +    ATV VD
Sbjct: 295 ARLNLVGGFQASNVLVAMGLVMATGAQVGDLVPLLPRLATVRGRMQKVARRENGATVFVD 354

Query: 392 YAHTPDALDKTLGSLREHCDGDLWCVFGCGGDRDNTKRPLMGGVAEQKANHVIITDDNPR 451
           YAHTPDAL   L +LR H  G L  VFG GGDRD+ KRPLMG  A   A+ V +TDDNPR
Sbjct: 355 YAHTPDALKTALRALRPHVLGRLVVVFGAGGDRDSGKRPLMGAAAAAAADVVFVTDDNPR 414

Query: 452 TENADNIVDMIRQGMSNKNAEYIQKRKEAIKFALTHSAANDMILVAGKGHEDYQQIGTKK 511
           +E+   I   +R G     A  +  R EAI   +      D++L+AGKGHE  Q +G   
Sbjct: 415 SEDPALIRAQVRAGC--PEATDVPDRAEAILRGVDALEPGDVLLIAGKGHETGQTVGDVV 472

Query: 512 IHYSDLE 518
             + D E
Sbjct: 473 YPFDDAE 479