Pairwise Alignments

Query, 490 a.a., RNA polymerase, sigma 54 subunit, RpoN/SigL from Kangiella aquimarina DSM 16071

Subject, 514 a.a., RNA polymerase factor sigma-54 from Sinorhizobium meliloti 1021

 Score =  234 bits (598), Expect = 4e-66
 Identities = 163/516 (31%), Positives = 267/516 (51%), Gaps = 47/516 (9%)

Query: 1   MNPTLQLNLSQQLKLSPQLQQSIKLLQLSHLALQQEIQYQLETNPLLNLVDGSYFEVSDQ 60
           ++ +L L  SQ L ++PQL QSI+LLQ++HL L   I  ++E NPLL +       +SD+
Sbjct: 3   LSASLHLRQSQSLVMTPQLMQSIQLLQMNHLELSHFIAQEVEKNPLLEVQPADEPTISDR 62

Query: 61  DDS----QADNHQKSSPDSASDNRDSNLS--SQMLSQAYFDLDQSSYSHGSTTISDNYFE 114
           +D+         +       SD  DS +S   + LS+   D D ++     T        
Sbjct: 63  EDAGPHPAETGGETDEAAGQSDLYDSAMSRSGERLSEG-LDADFANVFPDDTAPQRADAP 121

Query: 115 NLM-----------------QDSVG----LREHLEWQIQMSSLSRGDMEIAYYVIENIDD 153
            L+                  D VG    LRE L  Q+  +  +  D  IA Y I+ +DD
Sbjct: 122 ELLGQWKSMPGAGDAEGYDLDDFVGGRKTLRETLAEQLPFALSAVSDRLIARYFIDQLDD 181

Query: 154 AGFLTVTPEEIAKQIQEDFMHDVEADEIVAVIHQVQQLEPLGCASKDLQEFLIVQLNSMN 213
           AG+L     E A+ +          +++  V+H +QQ +P G  ++ L E L +QL + N
Sbjct: 182 AGYLHADLAETAETL------GAAGEDVARVLHVLQQFDPPGVFARTLGECLAIQLRARN 235

Query: 214 REAASQQKKSISLAIKLVTHHFNALQKHQYQDLRHRLSLTELELNDSLSLIKHLRTQPNY 273
           R         +  A++ +  +   L +  +  L+    + E +L D L+ I+ L  +P  
Sbjct: 236 R---------LDPAMEALVANLELLARRDFASLKKICGVDEEDLIDMLAEIRKLDPKPGT 286

Query: 274 QFIGESTEYIKPDVLVYKLGNE-WQAQLAGHSTPHLDINHQYADFLRKS--RNPNDHQYL 330
            F     E I PDV+V    +  W  +L   + P + +NH Y   + +S  +N  +  +L
Sbjct: 287 SFETGVFEAIIPDVVVRAAPDGGWLVELNPDALPRVLVNHDYFTEISRSSRKNSGEQAFL 346

Query: 331 RDRLQKARWFMQSIEARNDTLKRVADWIVRYQQNFFDNGESSIRPMRLKDLAQDLDLHES 390
            + LQ A W  +S++ R  T+ +VA  IVR Q  F  +G   +RP+ L+ +A  + +HES
Sbjct: 347 NECLQNANWLTRSLDQRARTIMKVASEIVRQQDAFLIHGVGHLRPLNLRIVADAIKMHES 406

Query: 391 TISRACSDKYLQSPRGIYELKYFFSNAIPSTQGGE-WSSKAIKNKIKQYVNAEPSRKPLS 449
           T+SR  S+KY+ +PRG++ELKYFF+ +I S + G+  S+++++++I+  +N E +   LS
Sbjct: 407 TVSRVTSNKYMLTPRGLFELKYFFTVSIGSAENGDAHSAESVRHRIRTMINQESADAVLS 466

Query: 450 DIKLAELLNQEGVSIARRTVAKYREALNIPPACQRK 485
           D  + ++L Q GV IARRTVAKYREA++IP + QR+
Sbjct: 467 DDDIVDVLKQAGVDIARRTVAKYREAMSIPSSVQRR 502