Pairwise Alignments

Query, 490 a.a., RNA polymerase, sigma 54 subunit, RpoN/SigL from Kangiella aquimarina DSM 16071

Subject, 477 a.a., RNA polymerase, sigma 54 subunit, RpoN (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  273 bits (698), Expect = 1e-77
 Identities = 163/484 (33%), Positives = 270/484 (55%), Gaps = 21/484 (4%)

Query: 6   QLNLSQQLKLSPQLQQSIKLLQLSHLALQQEIQYQLETNPLLNLVDGSYFEVSDQDDSQA 65
           QL L+QQL ++PQLQQ+I+LLQLS L L + +Q ++  NP L        +V   D  +A
Sbjct: 8   QLKLTQQLVMTPQLQQAIRLLQLSRLELVETVQQEMLENPFLEEAQDEGPQVETPDPREA 67

Query: 66  DNHQKSSPDSASDN---RDSNLSSQMLSQAYFDLDQSSYSHGSTTISDNYFENLMQDSVG 122
                ++ D A D    RD++    +   A     QS+            FE        
Sbjct: 68  AT---AAADVAYDREIARDADWEDYLGDFASTSR-QSTVRETEMPEEMTSFEARYAAKPS 123

Query: 123 LREHLEWQIQMSSLSRGDMEIAYYVIENIDDAGFLTVTPEEIAKQIQEDFMHDVEADEIV 182
           L  HL WQ+++SSL+    +I   +I NI  +G+L  T ++IA+      M  V   E+ 
Sbjct: 124 LEGHLMWQLRLSSLTERQKDIGEVIIGNIASSGYLHATVDDIAE------MAGVTPGEVE 177

Query: 183 AVIHQVQQLEPLGCASKDLQEFLIVQLNSMNREAASQQKKSISLAIKLVTHHFNALQKHQ 242
           +V+H VQ+ +P+G +++  QE L+VQ+  +             + ++LV  H   L+K +
Sbjct: 178 SVLHAVQRFDPVGVSARTAQECLLVQIEMLGYTRDK-------VLVELVRDHLEDLEKRR 230

Query: 243 YQDLRHRLSLTELELNDSLSLIKHLRTQPNYQFIGESTEYIKPDVLVYKLGNEWQAQLAG 302
           Y+ L  +  LT  +L + L LI+ L   P   + G   +++ PDV VYK  +++   L  
Sbjct: 231 YKPLLRKFRLTMEDLKEYLDLIQTLDPMPGASYGGGDPQFVSPDVYVYKYDDDFIIMLNE 290

Query: 303 HSTPHLDINHQYADFLRKSRNPNDHQYLRDRLQKARWFMQSIEARNDTLKRVADWIVRYQ 362
              PHL ++  Y      + +  + +Y +++++ A W ++S+  R  TL +V + IV+YQ
Sbjct: 291 DGLPHLQLSTMYERSAAAAASAGEREYFQEKMRSASWLIKSLYQRQRTLYKVVESIVKYQ 350

Query: 363 QNFFDNGESSIRPMRLKDLAQDLDLHESTISRACSDKYLQSPRGIYELKYFFSNAIPSTQ 422
           + FF++G S ++P+ LKD+A D+ +HEST+SR  + KY+ +P GI ELK+FF++A+    
Sbjct: 351 RGFFEDGVSRLKPLILKDIADDIGMHESTVSRITTSKYVATPHGIMELKFFFNSALELDD 410

Query: 423 GGEWSSKAIKNKIKQYVNAEPSRKPLSDIKLAELL-NQEGVSIARRTVAKYREALNIPPA 481
           G +  S+++K  IK+ +  E  R+PLSD ++ E+L +Q  V+IARRTVAKYR A++IP +
Sbjct: 411 GSQVGSESVKALIKKLIADEDPREPLSDERIGEILKDQLKVNIARRTVAKYRTAMDIPSS 470

Query: 482 CQRK 485
            +RK
Sbjct: 471 SKRK 474