Pairwise Alignments

Query, 490 a.a., RNA polymerase, sigma 54 subunit, RpoN/SigL from Kangiella aquimarina DSM 16071

Subject, 491 a.a., RNA polymerase sigma-54 factor (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  361 bits (926), Expect = e-104
 Identities = 196/497 (39%), Positives = 308/497 (61%), Gaps = 20/497 (4%)

Query: 1   MNPTLQLNLSQQLKLSPQLQQSIKLLQLSHLALQQEIQYQLETNPLLNLVDGSYFEVSD- 59
           M  +LQL L QQL ++PQLQQ+I+LLQLS L LQQEIQ  L++NPLL L +  +   S+ 
Sbjct: 1   MKASLQLKLGQQLTMTPQLQQAIRLLQLSSLELQQEIQQALDSNPLLELEEEQFDAPSER 60

Query: 60  -QDDSQADNHQKSSPDSASDNRDSNLSSQMLSQA----------YFDLDQSSYSHGSTTI 108
            QD +  D  + S+     DN   +++  +  ++          + ++  +S + GS   
Sbjct: 61  KQDLADTDFSETSAQPQEQDNSTVDIAESLTKESLPEELPMDTTWDEVFTASPNSGSGAS 120

Query: 109 SDNYFENLMQDSVGLREHLEWQIQMSSLSRGDMEIAYYVIENIDDAGFLTVTPEEIAKQI 168
            ++      + S GL EHLEWQ  ++  S  D+ IA  +I+ IDD G+LT + E+I + +
Sbjct: 121 REDDMPFQGETSEGLYEHLEWQKNLTPFSETDLAIATAIIDAIDDQGYLTQSTEDILEAM 180

Query: 169 QEDFMHDVEADEIVAVIHQVQQLEPLGCASKDLQEFLIVQLNSMNREAASQQKKSISLAI 228
                 ++E DE+ AV+ ++Q  +P+G A++DL E L++QL+  + +    +      A 
Sbjct: 181 GNP---EIELDEVEAVLKRIQHFDPVGVAARDLSECLLIQLSHFSPDTPHLEN-----AR 232

Query: 229 KLVTHHFNALQKHQYQDLRHRLSLTELELNDSLSLIKHLRTQPNYQFIGESTEYIKPDVL 288
            L+  H + +    ++ L  +  L E EL DS++LI+ L  +P         EY+ PDV 
Sbjct: 233 MLIKDHLDLIAARDFRLLMRKTKLKEDELRDSIALIQTLNPRPGLLITAVDEEYVVPDVS 292

Query: 289 VYKLGNEWQAQLAGHSTPHLDINHQYADFLRKSRNPNDHQYLRDRLQKARWFMQSIEARN 348
           V K    W  +L     P +++N QYA   R S+N  D Q++R  LQ+A+WF++S+E+RN
Sbjct: 293 VSKKNGRWVVELNPDCMPKINVNQQYAAMARSSKNQADSQFIRGHLQEAKWFIKSLESRN 352

Query: 349 DTLKRVADWIVRYQQNFFDNGESSIRPMRLKDLAQDLDLHESTISRACSDKYLQSPRGIY 408
           +TL +VA+ IV+YQQ FF+ GE +++PM L D+A+ +++HESTISR  + KY+ +P+G++
Sbjct: 353 ETLLKVANCIVQYQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPKGLF 412

Query: 409 ELKYFFSNAIPSTQGGEWSSKAIKNKIKQYVNAEPSRKPLSDIKLAELLNQEGVSIARRT 468
           ELKYFFS+ + +  GGE SS AI+  IK+ V AE  +KPLSD K+A+LL ++G+++ARRT
Sbjct: 413 ELKYFFSSHVGTDDGGECSSTAIRAFIKKLVAAENQKKPLSDSKMAQLLAEQGINVARRT 472

Query: 469 VAKYREALNIPPACQRK 485
           +AKYREA+ IPP+ QRK
Sbjct: 473 IAKYREAMLIPPSNQRK 489