Pairwise Alignments

Query, 490 a.a., RNA polymerase, sigma 54 subunit, RpoN/SigL from Kangiella aquimarina DSM 16071

Subject, 476 a.a., RNA polymerase sigma-54 factor (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  272 bits (695), Expect = 2e-77
 Identities = 162/487 (33%), Positives = 269/487 (55%), Gaps = 28/487 (5%)

Query: 6   QLNLSQQLKLSPQLQQSIKLLQLSHLALQQEIQYQLETNPLLNLVDGSYFEVSDQDDSQA 65
           QL LSQQL ++PQLQQ+I+LLQLS L L + +Q +L  NP L        E  D+  + +
Sbjct: 8   QLKLSQQLVMTPQLQQAIRLLQLSRLELVETVQQELLENPFLE-------EGMDEGAASS 60

Query: 66  DNHQKSSPD-SASDNRDSNLSSQMLSQAYFDLDQSSYSHGSTTISD-----NYFENLMQD 119
            +   S  D SA +  D  LS     + Y     SS        ++       FE     
Sbjct: 61  ASEASSRKDESAPEAYDRELSRNADWEDYLGEFASSSRQAQVRETELPEEMTAFEARYSA 120

Query: 120 SVGLREHLEWQIQMSSLSRGDMEIAYYVIENIDDAGFLTVTPEEIAKQIQEDFMHDVEAD 179
              L  HL WQ+++S L+     I   +I NI  +G+L  + E+IA+      M   +A 
Sbjct: 121 RPSLEGHLMWQLRLSRLTEDQKGIGETIIGNIGSSGYLQASVEDIAE------MCGADAS 174

Query: 180 EIVAVIHQVQQLEPLGCASKDLQEFLIVQLNSMNREAASQQKKSISLAIKLVTHHFNALQ 239
           E++ V+H VQ+ +P+G AS+  QE L++Q+  +  +          + ++LV  H   L+
Sbjct: 175 EVIPVLHAVQRFDPVGVASRTPQECLLIQIEMLGYDRDR-------VLVELVRDHLEDLE 227

Query: 240 KHQYQDLRHRLSLTELELNDSLSLIKHLRTQPNYQFIGESTEYIKPDVLVYKLGNEWQAQ 299
             +Y+ L  +  L   +L + L +I+ L   P   F G    ++ PDV VYK  +E+   
Sbjct: 228 TRRYKPLLRKFKLDMDDLKEYLDIIQSLDPMPGSSFGGSDPMFVSPDVFVYKYDDEFVIV 287

Query: 300 LAGHSTPHLDINHQYADFLRKSRNPNDHQYLRDRLQKARWFMQSIEARNDTLKRVADWIV 359
           L     PHL ++  Y   L       D  +++++++ A W ++S+  R  TL +V + I+
Sbjct: 288 LNDDGLPHLQLSSLYDQSLAGVTG-KDKDFVQEKVRSASWLIKSLYQRQRTLYKVVESII 346

Query: 360 RYQQNFFDNGESSIRPMRLKDLAQDLDLHESTISRACSDKYLQSPRGIYELKYFFSNAIP 419
           +YQ+ FF++G + +RP+ LKD+A D+ +HEST+SR  ++K++ +P G++ELK+FF++A+ 
Sbjct: 347 KYQRGFFEDGVTRLRPLILKDIADDISMHESTVSRITTNKFVATPHGVFELKFFFNSALE 406

Query: 420 STQGGEWSSKAIKNKIKQYVNAEPSRKPLSDIKLAELLNQE-GVSIARRTVAKYREALNI 478
              G +  S+++K  IK+ +  E  ++PLSD ++ E+L ++  V+IARRTVAKYR A+NI
Sbjct: 407 LDDGSQVGSESVKALIKKLIGEENPKEPLSDERIGEILKEQLQVNIARRTVAKYRTAMNI 466

Query: 479 PPACQRK 485
           P + +RK
Sbjct: 467 PSSSKRK 473