Pairwise Alignments

Query, 490 a.a., RNA polymerase, sigma 54 subunit, RpoN/SigL from Kangiella aquimarina DSM 16071

Subject, 491 a.a., RNA polymerase factor sigma-54 (RefSeq) from Shewanella sp. ANA-3

 Score =  352 bits (903), Expect = e-101
 Identities = 191/497 (38%), Positives = 307/497 (61%), Gaps = 20/497 (4%)

Query: 1   MNPTLQLNLSQQLKLSPQLQQSIKLLQLSHLALQQEIQYQLETNPLLNLVDGSYFEVSD- 59
           M  +LQL L QQL ++PQLQQ+I+LLQLS L LQQEIQ  L++NPLL L +  +   ++ 
Sbjct: 1   MKASLQLKLGQQLTMTPQLQQAIRLLQLSSLELQQEIQQALDSNPLLELEEEQFDAPTER 60

Query: 60  -QDDSQADNHQKSSPDSASDNRDSNLSSQMLSQA----------YFDLDQSSYSHGSTTI 108
            QD +  D  + ++     DN   +++  +  ++          + ++  +S + GS   
Sbjct: 61  KQDIADTDFSETTAQPQEQDNSTVDIAESLTKESLPEELPMDTTWDEVFTASPNSGSGAS 120

Query: 109 SDNYFENLMQDSVGLREHLEWQIQMSSLSRGDMEIAYYVIENIDDAGFLTVTPEEIAKQI 168
            ++      + S GL EHLEWQ  ++  S  D+ IA  +I+ IDD G+LT + E+I + +
Sbjct: 121 REDDMPFQGETSEGLYEHLEWQKNLTPFSETDLAIATAIIDAIDDQGYLTQSTEDILEAM 180

Query: 169 QEDFMHDVEADEIVAVIHQVQQLEPLGCASKDLQEFLIVQLNSMNREAASQQKKSISLAI 228
                 ++E DE+ AV+ ++Q  +P+G A++DL E L++QL+    +    +      A 
Sbjct: 181 GNP---EIELDEVEAVLKRIQHFDPVGVAARDLSECLLIQLSHFALDTPHLEN-----AR 232

Query: 229 KLVTHHFNALQKHQYQDLRHRLSLTELELNDSLSLIKHLRTQPNYQFIGESTEYIKPDVL 288
            L+  H + +    ++ L  +  L E EL +S++LI+ L  +P         EY+ PDV 
Sbjct: 233 MLIKDHLDLIAARDFRLLMRKTKLKEDELRESIALIQTLNPRPGLLITPVDEEYVIPDVS 292

Query: 289 VYKLGNEWQAQLAGHSTPHLDINHQYADFLRKSRNPNDHQYLRDRLQKARWFMQSIEARN 348
           V K    W  +L     P +++N QYA   R +++  D Q++R  LQ+A+WF++S+E+RN
Sbjct: 293 VSKKNGRWVVELNPDCMPKINVNQQYAAMARSTKSQADSQFIRGHLQEAKWFIKSLESRN 352

Query: 349 DTLKRVADWIVRYQQNFFDNGESSIRPMRLKDLAQDLDLHESTISRACSDKYLQSPRGIY 408
           +TL +VA+ IV+YQQ FF+ GE +++PM L D+A+ +++HESTISR  + KY+ +P+G++
Sbjct: 353 ETLLKVANCIVQYQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPKGLF 412

Query: 409 ELKYFFSNAIPSTQGGEWSSKAIKNKIKQYVNAEPSRKPLSDIKLAELLNQEGVSIARRT 468
           ELKYFFS+ + +  GGE SS AI+  IK+ V AE  +KPLSD K+A+LL ++G+++ARRT
Sbjct: 413 ELKYFFSSHVGTDDGGECSSTAIRAFIKKLVAAENQKKPLSDSKMAQLLAEQGINVARRT 472

Query: 469 VAKYREALNIPPACQRK 485
           +AKYREA+ IPP+ QRK
Sbjct: 473 IAKYREAMLIPPSNQRK 489