Pairwise Alignments

Query, 176 a.a., Holliday junction endonuclease RuvC (EC 3.1.22.4) from Kangiella aquimarina DSM 16071

Subject, 173 a.a., Holliday junction resolvase (RefSeq) from Shewanella amazonensis SB2B

 Score =  199 bits (505), Expect = 3e-56
 Identities = 104/177 (58%), Positives = 134/177 (75%), Gaps = 5/177 (2%)

Query: 1   MPIILGIDPGSRLTGFGIIEVGGQIPANRPRYITSGCIRIKDETLDLKLKQIFDSVCELI 60
           M IILG+DPGSR+TG+G+I+  G+       Y+ SGCIR   + L  +LKQIFD + E+I
Sbjct: 1   MAIILGVDPGSRITGYGVIQCQGR----HQLYLGSGCIRTSSDELPDRLKQIFDGLQEII 56

Query: 61  QEFKPDEFAIESVFLSKNADSALKLGQARGAAIVAASHYALPVSEYPARKVKQSVVGTGG 120
           ++++P +FAIE VF++KNADSALKLGQARGAAIVAA+   LPV+EY A ++K +VVGTG 
Sbjct: 57  RQYQPSQFAIERVFMAKNADSALKLGQARGAAIVAATVAGLPVAEYSATQIKNAVVGTGR 116

Query: 121 ADKTQVQHMVKTLLKLPTSPQADAADALAVALCHANTTQGLAQLKGVKTI-TRGRLR 176
           A K QVQHMV+ +LKLP +PQADAADALAVA+CH +T Q L  L G  ++ T GR R
Sbjct: 117 AQKAQVQHMVQQMLKLPAAPQADAADALAVAMCHYHTHQSLVALGGRASVRTYGRYR 173