Pairwise Alignments

Query, 514 a.a., FOG: LysM repeat from Kangiella aquimarina DSM 16071

Subject, 477 a.a., transglycosylase, Slt family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  250 bits (638), Expect = 9e-71
 Identities = 153/442 (34%), Positives = 229/442 (51%), Gaps = 25/442 (5%)

Query: 36  TEDGSPLPAPE--LDNNNPLLLSDSEVAPFVPNLWEHLASEQSFANVQHPRIDAFREQYL 93
           TE G+ LP  E   ++  P  +    +     ++WE +   ++        +   R  + 
Sbjct: 36  TEFGAGLPEAEDHSESAEPQSVEAEVIDERYADVWEKIQHARTIDVHDDAEVRKQRNFFD 95

Query: 94  KSPHLLLKRADKAAPYLYYIITELENRNMPVELAFTPMVESNFDPLAHSVVQAAGMWQFM 153
                + +   +A P+LYYI+++LE RNMP+ELA  P+VES ++PLA +    AG+WQ +
Sbjct: 96  DKQKFMTQVTQRAEPFLYYIVSQLEARNMPLELALLPIVESGYNPLAQAN-GPAGLWQMI 154

Query: 154 PKTAKGFGITIDEWYDGRRDIVASTHAALDYYQYLNKMFDGDWLLTVAAYNVGPGNVMKA 213
           P T + FG+TI+  YDGR+D +AST A LDY Q+L      DW+  VA YN G   +  A
Sbjct: 155 PATGRNFGLTINSAYDGRKDALASTDAVLDYLQHLYNTLGNDWINAVAGYNSGELVIKAA 214

Query: 214 IRANKRQGKPTDYWSLKLPKETMRHIPKWLALSDIFLNAPKYQVDLPLIDNQPAFVEVEV 273
           I  NK +GKPTD+WSL +P   ++ +PKWLA   I      Y + +  I N+P    +  
Sbjct: 215 IDRNKAKGKPTDFWSLNIPARQVQTVPKWLAFIQIIREPSHYNLKVMPIANRPFLERLPA 274

Query: 274 DAPANLMELAKIAQIDKDTFYRLNPAYNRLFVPEHHKKATILVPVETVDHFNQGLLEIDP 333
                + ++A  A + K  F   NP Y +  +P    K  I +P+E + H+ +   ++  
Sbjct: 275 PNGVEISQIANAAGLTKAEFKTYNPGYRQSVIPS-KGKYQIALPIENIGHYQENQHKLYA 333

Query: 334 KQLMASVSYKVKSGDNLSLIAKRHNTSVKTIKQLNGLKSDFLKIGQELKM--PGIINATE 391
           ++   S +Y VKSGD+L  IA + + SVK +KQ N L SD LKIGQEL +  P   N  E
Sbjct: 334 QKRYDSQTYIVKSGDSLGTIAAKFDLSVKELKQANNLTSDRLKIGQELTLLTPMAANDNE 393

Query: 392 YE-----------------KNFFATLSKNQQR--RRYQVYNVRSGDSLWTIAKKFGVSTR 432
            E                  +  AT SK+  +   + + Y V+SGDSL  IA+K  V   
Sbjct: 394 PEPVKTKANTDKSSTKANASSTKATSSKSTDKPVAKAKTYKVKSGDSLDKIARKSKVKLA 453

Query: 433 QLANWNGIAQNSTIRIGQKLKV 454
            L  WN +   S I+ GQ+LK+
Sbjct: 454 DLMKWNQLNAKSIIKPGQELKI 475



 Score = 75.5 bits (184), Expect = 4e-18
 Identities = 84/280 (30%), Positives = 124/280 (44%), Gaps = 55/280 (19%)

Query: 278 NLMELAKIAQIDKDT-------FYRLN-PAYNRLFVPEHHKKATILVPVETVDHFNQGLL 329
           N  EL   A ID++        F+ LN PA     VP   K    +  +    H+N  ++
Sbjct: 205 NSGELVIKAAIDRNKAKGKPTDFWSLNIPARQVQTVP---KWLAFIQIIREPSHYNLKVM 261

Query: 330 EIDPKQLMASVSYKVKSGDNLSLIAKRHNTSVKTIKQLN-GLKSDFL--KIGQELKMPGI 386
            I  +  +  +     +G  +S IA     +    K  N G +   +  K   ++ +P I
Sbjct: 262 PIANRPFLERLP--APNGVEISQIANAAGLTKAEFKTYNPGYRQSVIPSKGKYQIALP-I 318

Query: 387 INATEYEKNFFATLSKNQQRRRYQVYNVRSGDSLWTIAKKFGVSTRQLANWNGIAQNSTI 446
            N   Y++N     +  Q+R   Q Y V+SGDSL TIA KF +S ++L   N +  +  +
Sbjct: 319 ENIGHYQENQHKLYA--QKRYDSQTYIVKSGDSLGTIAAKFDLSVKELKQANNLTSDR-L 375

Query: 447 RIGQKLKVWPRGYAN--------------------------YASNKSS---------YQV 471
           +IGQ+L +     AN                            S+KS+         Y+V
Sbjct: 376 KIGQELTLLTPMAANDNEPEPVKTKANTDKSSTKANASSTKATSSKSTDKPVAKAKTYKV 435

Query: 472 KSGDSLYTIARRFNVKVSDLTKWNGLKNASLIKPGQTLTI 511
           KSGDSL  IAR+  VK++DL KWN L   S+IKPGQ L I
Sbjct: 436 KSGDSLDKIARKSKVKLADLMKWNQLNAKSIIKPGQELKI 475