Pairwise Alignments

Query, 455 a.a., DNA replication and repair protein RadA from Kangiella aquimarina DSM 16071

Subject, 454 a.a., DNA repair protein RadA (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  545 bits (1405), Expect = e-160
 Identities = 273/456 (59%), Positives = 344/456 (75%), Gaps = 3/456 (0%)

Query: 1   MGKVKTIYVCQECGSETPQWAGQCGACKAWNSMVEQVDAKKVSSTAKSSRFTGYAGQDSK 60
           M K KT YVC ECG + P+W GQC AC  WN++ E       +S  + ++F GYAG  S 
Sbjct: 1   MAKNKTAYVCNECGQDFPRWQGQCSACHEWNTITEV--RLGAASPGRGTKFAGYAGAGSS 58

Query: 61  VVK-MDKVDLSELPRMSSGLSELDRVLGGGLVPGSVVLMGGDPGIGKSTILLQSLCKISE 119
            VK +D++DL+ LPR+ S   ELDRVLGGG+VPGS +L+GG PG GKST+LLQ+LC ++E
Sbjct: 59  EVKTLDQIDLNALPRIVSHFGELDRVLGGGIVPGSAILIGGHPGAGKSTLLLQTLCHLAE 118

Query: 120 TDSVLYVTGEESLQQVTMRAQRLGLATGDFSLLTETQVEQITTQALMQKPKVMVVDSIQT 179
               LYVTGEESLQQV MRA RLGL T    +L+ET VEQI   AL + PKV+VVDSIQ 
Sbjct: 119 QMPALYVTGEESLQQVAMRAHRLGLPTNKLRMLSETSVEQICEIALQESPKVIVVDSIQV 178

Query: 180 IYTEMLQSAPGGVAQVRESAAQLVRFAKQTGITLLVVGHVTKDGALAGPRVLEHMVDAVL 239
           ++   + S+PG V+QVRESA+ L RFAKQ GI +++VGHVTKDG+LAGP+VLEH +D  +
Sbjct: 179 MHMSDVASSPGSVSQVRESASYLTRFAKQHGIAVIMVGHVTKDGSLAGPKVLEHCIDCSV 238

Query: 240 YFEGERDGRLRLLRAVKNRFGAVNELGVFAMTDEGLKQVKNPSAIFLSKYQDPVAGSAVM 299
            FEG+ D R R LR+ KNRFGA+NELGVFAMT+ GLK+V NPSAIFLS+ ++  +GS VM
Sbjct: 239 MFEGDSDSRYRTLRSHKNRFGAINELGVFAMTERGLKEVANPSAIFLSRGEEESSGSLVM 298

Query: 300 ATWEGTRPMLVEIQALVDTSHAPQPRRIAVGLDHQRIAMLLAVLNRHAGIATYDQDVFAN 359
             WEGTRP+LVE+Q LVD S    PRR+AVG+D  R+AMLLAV++RH G+   DQDVF N
Sbjct: 299 VVWEGTRPLLVELQVLVDNSAMSNPRRVAVGMDANRLAMLLAVMHRHGGLQMSDQDVFVN 358

Query: 360 VVGGVRVMETSSDLALVASIISSLRNRPLEEHTVIFGEIGLAGEIRPVPNGQERLKEAAK 419
           VVGGV+V ETS+DL L+ +++SS R   L    V+FGE+GL+GEIRPVPNGQERL EAAK
Sbjct: 359 VVGGVKVTETSADLTLLLAMVSSFRGDILPSDLVVFGEVGLSGEIRPVPNGQERLVEAAK 418

Query: 420 HGFKRAIVPEGNKPQKPFDGMEVIGVSRMAQFIQLI 455
           HGFKRAIVP  N P+KP  GMEV+GVS++++ ++ I
Sbjct: 419 HGFKRAIVPRANVPKKPPVGMEVVGVSKLSEALEAI 454