Pairwise Alignments

Query, 726 a.a., Superfamily I DNA and RNA helicases from Kangiella aquimarina DSM 16071

Subject, 857 a.a., DNA helicase II protein from Sinorhizobium meliloti 1021

 Score =  459 bits (1180), Expect = e-133
 Identities = 278/690 (40%), Positives = 382/690 (55%), Gaps = 70/690 (10%)

Query: 7   IQPLNDAQKEAVTAPNKALLVLAGAGSGKTRVLVHRIAWLVQVERVSAHSILAVTFTNKA 66
           +  LN  Q+EAV A    +LVLAGAG+GKTRVL  RIA ++   R     ILAVTFTNKA
Sbjct: 44  VSGLNPEQREAVEALEGPVLVLAGAGTGKTRVLTTRIAHILSTGRAYPSQILAVTFTNKA 103

Query: 67  AKEMLGRVEDMLAMPARGM-WIGTFHSIAHRLLRAHYRDAGLPEGFQILDAQDQLRVIKR 125
           A+EM  R+  ++     GM W+GTFHSI  +LLR H    GL   F ILD  D +R+IK+
Sbjct: 104 AREMKERIGVLVGHAVEGMPWLGTFHSIGVKLLRRHAELVGLRSDFTILDTDDVVRLIKQ 163

Query: 126 VMKELNLDDNEWPPKQAQWFINAKKDDGLRPGDIHHHGD---FFVSTMVKVYYAYEEACK 182
           +++   LDD  WP KQ    I+  K+ GL P  I   GD   F      ++Y AY+    
Sbjct: 164 LIQAEGLDDKRWPAKQFAGMIDTWKNKGLDPSQIPE-GDARAFANGKGRELYAAYQNRLL 222

Query: 183 RGGLVDFNELLLRAYELWANNPHLLKHYQDRFQHILVDEFQDTNAIQYAWIRLLCNDNN- 241
                DF +LLL    ++  NP +LK Y  +F++ILVDE+QDTN  QY W+RLL      
Sbjct: 223 TLNACDFGDLLLHPIRMFRANPDVLKEYHAKFRYILVDEYQDTNTAQYMWLRLLAQQTQA 282

Query: 242 ----------------------------------------------RITIVGDDDQSIYG 255
                                                          I  VGDDDQSIYG
Sbjct: 283 SRNRPSSGLPATFSPSDGEKGQAARSQSPLSPSERGEGRGEGQPTVNICCVGDDDQSIYG 342

Query: 256 WRGARIENIQQFEKDFPDCKVSRLEQNYRSTSTILKAANAVIANNQDRMGKSLWTEGNQ- 314
           WRGA ++NI +FEKDFP  KV +LE+NYRST  IL AA  +IA+N+ R+GK+L+TE    
Sbjct: 343 WRGAEVDNILRFEKDFPGAKVIKLERNYRSTEHILGAAAHLIAHNEGRLGKTLFTERTNP 402

Query: 315 -GEPIILYSAFNEQEEARFIAARIEDWVQQGNSYDDIAILYRSNAQSRILEDAMLQKGIP 373
             E + +++A++ +EEAR I   IE   ++ ++ +DI+IL R++ Q R  ED  +  G+ 
Sbjct: 403 DDEKVHVHAAWDSEEEARAIGEEIEQLQRKKHNLNDISILVRASFQMREFEDRFVTLGLN 462

Query: 374 YRIYGGLRFFERAEIKDTLAYMRLMANRDDDTSFERVVNQPARGLGEKSVDMIRMQARQD 433
           YR+ GG RF+ER EI+D +AY RL+    DD +FER+VN P RGLGE +V  +   AR  
Sbjct: 463 YRVIGGPRFYERLEIRDAMAYFRLVCQPADDLAFERIVNTPKRGLGETTVRTLHDYARAR 522

Query: 434 ETSLWQAASKMVVEQLLPPRAKNALGGFLHLINELETSTAELDLWEQTDIVIEHSGLLDM 493
           +  +  AAS +V    L P+A+  L   +      +T        E  + +++ SG   M
Sbjct: 523 DIPMLAAASDIVETDELKPKARKGLFDVVADFRRWQTLLETTPHTELAERILDESGYTAM 582

Query: 494 YSKEKGEKGQARKENLQELVNATREFDPDEAIPDETPDMTPLQAFIAHATLEAGETQADE 553
           +  +K  +   R ENL+EL+ +   F+              ++ F+ H  L   + + +E
Sbjct: 583 WQADKSAEAPGRLENLKELIRSMEAFE-------------SMRGFLEHVAL-VMDAEQNE 628

Query: 554 YQESVQMMTLHSAKGLEFPLVFIAGVEEKLFPHQMSLDEPG--GLEEERRLAYVGITRAM 611
             ++V +MTLHSAKGLEF  VF+ G EE LFPHQ +LDE G  GLEEERRLAYVGITRA 
Sbjct: 629 NMDAVSIMTLHSAKGLEFDTVFLPGWEEGLFPHQRALDEGGRAGLEEERRLAYVGITRAK 688

Query: 612 KQLYLTFAEKRRIFGRETYPQQSRFIREIP 641
           ++ ++ F   RRI G       SRF+ E+P
Sbjct: 689 RRCHIWFVSNRRIHGLWQSTLPSRFLDELP 718



 Score = 29.3 bits (64), Expect = 9e-04
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 4/45 (8%)

Query: 672 PEGFYLGQLVKHPKFGKGIIINYEGEGPQASVQINFEKEGLKKLM 716
           P  F +G  V H KFG G I   EG      + I+F++ G K+++
Sbjct: 810 PSRFNVGDRVFHIKFGNGNIAAIEGN----KLTIDFDRAGQKRVL 850