Pairwise Alignments

Query, 726 a.a., Superfamily I DNA and RNA helicases from Kangiella aquimarina DSM 16071

Subject, 722 a.a., DNA helicase II (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  865 bits (2235), Expect = 0.0
 Identities = 428/726 (58%), Positives = 545/726 (75%), Gaps = 9/726 (1%)

Query: 1   MDASSIIQPLNDAQKEAVTAPNKALLVLAGAGSGKTRVLVHRIAWLVQVERVSAHSILAV 60
           MD SS++  LND Q+EAV AP  ++LVLAGAGSGKTRVL HRIAWL+QVE+ S +SILAV
Sbjct: 1   MDVSSLLDGLNDKQREAVAAPQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAV 60

Query: 61  TFTNKAAKEMLGRVEDMLAMPARGMWIGTFHSIAHRLLRAHYRDAGLPEGFQILDAQDQL 120
           TFTNKAA EM  RVE +       MWIGTFH +AHRLLR H++DAGLP+ FQILD+ DQL
Sbjct: 61  TFTNKAAAEMRERVEKVAGTNMGRMWIGTFHGLAHRLLRTHFQDAGLPQSFQILDSDDQL 120

Query: 121 RVIKRVMKELNLDDNEWPPKQAQWFINAKKDDGLRPGDIHHHGDFFVSTMVKVYYAYEEA 180
           R++KR++K LNLD+ ++PP+QAQ +IN KKD GLRP  I   G      ++K+Y  Y+E+
Sbjct: 121 RLLKRILKSLNLDEKQYPPRQAQGYINGKKDQGLRPKHIDAGGFPIEQNLLKIYQVYQES 180

Query: 181 CKRGGLVDFNELLLRAYELWANNPHLLKHYQDRFQHILVDEFQDTNAIQYAWIRLLCNDN 240
           C R GLVDF E+LLRA+ELW N PHLL HYQ+RF+HILVDEFQDTNAIQYAWIR+L    
Sbjct: 181 CDRAGLVDFAEILLRAHELWLNKPHLLAHYQERFKHILVDEFQDTNAIQYAWIRMLAGQT 240

Query: 241 NRITIVGDDDQSIYGWRGARIENIQQFEKDFPDCKVSRLEQNYRSTSTILKAANAVIANN 300
             + IVGDDDQSIYGWRGA++EN+ +F KDFP     RLEQNYRS   ILKA+NA+IANN
Sbjct: 241 ANVMIVGDDDQSIYGWRGAQVENLHRFLKDFPTATTIRLEQNYRSKGNILKASNALIANN 300

Query: 301 QDRMGKSLWTEGNQGEPIILYSAFNEQEEARFIAARIEDWVQQGNSYDDIAILYRSNAQS 360
            +R+GK LWT+   GEPI LY AFNE +EARFI  RI DW ++G +  D AILYRSNAQS
Sbjct: 301 PERLGKELWTDEADGEPISLYCAFNEMDEARFIVGRINDWYEKGGNLSDCAILYRSNAQS 360

Query: 361 RILEDAMLQKGIPYRIYGGLRFFERAEIKDTLAYMRLMANRDDDTSFERVVNQPARGLGE 420
           R+LE+A+L KG+ YRIYGGLRFFER EIKD + YMRL++N++DD +FERVVN P RG+G+
Sbjct: 361 RVLEEALLHKGLAYRIYGGLRFFERQEIKDAMGYMRLISNKNDDAAFERVVNTPPRGIGD 420

Query: 421 KSVDMIRMQARQDETSLWQAASKMVVEQLLPPRAKNALGGFLHLINELETSTAELDLWEQ 480
           +++D++R  ARQ E +LWQA  +++ E++L  RA +A+ GF+ LI  L+  T ++ L+  
Sbjct: 421 RTLDILRTTARQQELTLWQACLRLLDEKVLAGRAASAVRGFMDLIVTLQEDTQDMALYRM 480

Query: 481 TDIVIEHSGLLDMYSKEKGEKGQARKENLQELVNATREFDPDEAIPDETPDMTPLQAFIA 540
            D VI+ SGL  MY  EKGEK  AR ENL+ELV A R F+    +P+E  DM  L AF++
Sbjct: 481 ADTVIQASGLKAMYEAEKGEKAHARIENLEELVTAARTFE----MPEELEDMGELNAFLS 536

Query: 541 HATLEAGETQADEYQESVQMMTLHSAKGLEFPLVFIAGVEEKLFPHQMSLDEPGGLEEER 600
           HA LEAGE QAD + ++VQ+MTLHSAKGLEF +VF+AGVEE +FP +M+L+E   L+EER
Sbjct: 537 HAALEAGEGQADAFTDAVQLMTLHSAKGLEFTMVFMAGVEEGIFPSKMALEEGDRLDEER 596

Query: 601 RLAYVGITRAMKQLYLTFAEKRRIFGRETYPQQSRFIREIPDELLTEVRLNTRVQRPVFN 660
           RL YVG+TRAM++LY+T+AE RRI+GRE Y + SRFI+EIP + + E+RL  +V  P+ N
Sbjct: 597 RLCYVGMTRAMEKLYITYAESRRIYGREDYARPSRFIKEIPPQYVDEIRLKAQVSTPMAN 656

Query: 661 R---SPKSPIQRKGPEGFYLGQLVKHPKFGKGIIINYEGEGPQASVQINFEKEGLKKLML 717
               + KS +      GF +GQ V HPKFG G + N+EG G QA VQ+NF   G K L++
Sbjct: 657 NRFSTQKSAV--ANDTGFSVGQRVHHPKFGDGKVTNFEGSGAQARVQVNFSDFGSKWLVV 714

Query: 718 AYAKLE 723
           AYA+LE
Sbjct: 715 AYARLE 720