Pairwise Alignments

Query, 406 a.a., RND transporter MFP subunit from Herbaspirillum seropedicae SmR1

Subject, 368 a.a., RND family efflux transporter, MFP subunit from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  123 bits (308), Expect = 1e-32
 Identities = 97/375 (25%), Positives = 168/375 (44%), Gaps = 20/375 (5%)

Query: 18  EPQQRQQMMRRARVVLVVVLLLLAAGAARTVISRVANARELQAGTAERAKMFVRVAPVRS 77
           E  Q Q +M++   +L ++ + + +  +         ++E      E   +  + AP   
Sbjct: 4   EKAQNQNIMKK--YILPILYMAIVSACSNKAEKSSMESKEGLTKKVETITVSYQNAP--- 58

Query: 78  SAEGQTLALPGTLQGFVQSPISARSGGYLKRWTKDIGAEVKKGELLAELDTPEIDQQLTQ 137
               Q L LP  L  F ++ ++AR  GY+ +   DIG +V KG +L +++ PE+     +
Sbjct: 59  ----QALTLPAELHAFEKAGMNARVQGYVNQVRVDIGDKVSKGAVLVKIEAPEVQAAYAE 114

Query: 138 ALAAREQAASSMELARSSMARW-EALRKKDAVSQQELDERRSAFAQASANLAAADANVGR 196
           A +  E A +    ++    R  +A  K   VS+ +L + ++     S  L AAD     
Sbjct: 115 ARSEVESARADYMSSKDVFERLVKASGKPGTVSESDLIKAKNNAMADSTRLVAADYTARA 174

Query: 197 LRQVEGFKRIVAPFSGIITRRNVDVGDLIDPGAGRALFVLSQTDPLRVYVNVPQSYANLV 256
            +Q+  +  I APF+G+IT+RN D G+L+    G  L V+     LR+ V VP++     
Sbjct: 175 KQQLLDYLTIRAPFNGVITQRNTDPGNLVGGNNGVPLLVIENNQKLRLKVPVPEALTGSS 234

Query: 257 KPGQQVTVTQSELRGRKFEGKVARTAGAIDAATRSMQVEVTLSNADHALLPGAFVQVALP 316
                VT       G  F+    R A +ID  TR+   E  ++N    L  G F +V L 
Sbjct: 235 IAEDAVTFKVDPFPGTLFKADFYRRARSIDPETRTEMWEFVVNNQKSELNAGLFAEVQLN 294

Query: 317 IKPSGALL-----VAADTLMFRRDGTLVAAVDPHNQVRLKKLRLGRNFGQTVEVLDGLQG 371
           I+ +G  +         TL  +  G +V       +++  K++ G     TVEV   L  
Sbjct: 295 IQRTGGSIWVPHSAVLTTLRRKAVGKVV-----EGKLKWVKVKTGMKNQGTVEVFGALDT 349

Query: 372 DEHLILNPSDALAEG 386
            + ++L P++ + EG
Sbjct: 350 GDRILLQPNEEMTEG 364