Pairwise Alignments

Query, 505 a.a., D-ribose transporter ATP-binding protein from Herbaspirillum seropedicae SmR1

Subject, 501 a.a., D-ribose ABC transporter ATPase from Escherichia coli BL21

 Score =  389 bits (999), Expect = e-112
 Identities = 213/498 (42%), Positives = 309/498 (62%), Gaps = 12/498 (2%)

Query: 12  VLSLSGIGKRFQGVVALQDVGFTVRPGEVMALLGENGAGKSTLVKILTGIHQPDEGSIHL 71
           +L L GI K F GV AL      V PG VMAL+GENGAGKST++K+LTGI+  D G++  
Sbjct: 4   LLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYARDAGTLLW 63

Query: 72  GGREVRFASAQDAMRGGITAVHQETVMFEELSVAENIWIGRQPLCGTPRRIDWRRMEDEA 131
            G+E  F   + +   GI  +HQE  +  +L++AENI++GR+       +IDW+ M  EA
Sbjct: 64  LGKETTFTGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGRE-FVNRFGKIDWKTMYAEA 122

Query: 132 RALFARLEVDLPVRARVKDLSVAQRHFVEIARALSQQAQVVIMDEPTAALSHHEIGELYR 191
             L A+L +       V DLS+  +  VEIA+ LS +++V+IMDEPT AL+  E   L+R
Sbjct: 123 DKLLAKLNLRFKSDKLVGDLSIGDQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFR 182

Query: 192 IIGQLRRAGTAVIFISHKFDEIYAVADRYTVLRDGRFIASGELADITEQQLVALMVGREV 251
           +I +L+  G  +++ISH+  EI+ + D  TV RDG+FIA  E+A +TE  L+ +MVGR++
Sbjct: 183 VIRELKSQGRGIVYISHRMKEIFEICDDVTVFRDGQFIAEREVASLTEDSLIEMMVGRKL 242

Query: 252 GQVFSRAASNTEDQTAPVLEVKHLSHPSEFDDVSFAVRPGEILGFYGLVGAGRSEVMHAL 311
              +        D     L+V +L  P   +DVSF +R GEILG  GL+GAGR+E+M  L
Sbjct: 243 EDQYPHLDKAPGDIR---LKVDNLCGPG-VNDVSFTLRKGEILGVSGLMGAGRTELMKVL 298

Query: 312 FGLSPEAQGAVWIDGREVKLCSPAQAIAHGLAYVPEDRQRQGALLSLPIFQNITLPVLPG 371
           +G  P   G V +DG EV   SP   +A+G+ Y+ EDR+R G +L + + +N++L  L  
Sbjct: 299 YGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRY 358

Query: 372 I----GFFLRRHRRREIDIARRLCEQLELKASHFHQHVAQLSGGNQQKVVLAKWLATQPR 427
                G       ++ +    RL     +K     Q +  LSGGNQQKV +A+ L T+P+
Sbjct: 359 FSRAGGSLKHADEQQAVSDFIRL---FNVKTPSMEQAIGLLSGGNQQKVAIARGLMTRPK 415

Query: 428 VLILDEPTKGIDIGSKAAVHRFIGELVAQGLAVILVSSELPEVMGMSDRIVVMHQGRVQQ 487
           VLILDEPT+G+D+G+K  +++ I +  A GL++ILVSSE+PEV+GMSDRI+VMH+G +  
Sbjct: 416 VLILDEPTRGVDVGAKKEIYQLINQFKADGLSIILVSSEMPEVLGMSDRIIVMHEGHLSG 475

Query: 488 VFSRAEASAEALAAAASG 505
            F+R +A+ E L AAA G
Sbjct: 476 EFTREQATQEVLMAAAVG 493



 Score = 92.4 bits (228), Expect = 3e-23
 Identities = 68/231 (29%), Positives = 115/231 (49%), Gaps = 13/231 (5%)

Query: 28  LQDVGFTVRPGEVMALLGENGAGKSTLVKILTGIHQPDEGSIHLGGREVRFASAQDAMRG 87
           + DV FT+R GE++ + G  GAG++ L+K+L G      G + L G EV   S QD +  
Sbjct: 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLAN 327

Query: 88  GITAVHQETV---MFEELSVAENIWIGR----QPLCGTPRRIDWRRMEDEARALFARL-E 139
           GI  + ++     +   +SV EN+ +          G+ +  D    E +A + F RL  
Sbjct: 328 GIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHAD----EQQAVSDFIRLFN 383

Query: 140 VDLP-VRARVKDLSVAQRHFVEIARALSQQAQVVIMDEPTAALSHHEIGELYRIIGQLRR 198
           V  P +   +  LS   +  V IAR L  + +V+I+DEPT  +      E+Y++I Q + 
Sbjct: 384 VKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKA 443

Query: 199 AGTAVIFISHKFDEIYAVADRYTVLRDGRFIASGELADITEQQLVALMVGR 249
            G ++I +S +  E+  ++DR  V+ +G           T++ L+A  VG+
Sbjct: 444 DGLSIILVSSEMPEVLGMSDRIIVMHEGHLSGEFTREQATQEVLMAAAVGK 494