Pairwise Alignments

Query, 285 a.a., nucleotide-binding protein from Herbaspirillum seropedicae SmR1

Subject, 285 a.a., Uncharacterized P-loop ATPase protein UPF0042 from Pseudomonas syringae pv. syringae B728a ΔmexB

 Score =  219 bits (559), Expect = 4e-62
 Identities = 131/291 (45%), Positives = 179/291 (61%), Gaps = 16/291 (5%)

Query: 1   MRIVLITGISGSGKSVALHVLEDAGYFCVDNLPPSLLCDLVQTRI---QEGASRLAVATD 57
           MR+++++G SGSGKS AL VLED G++CVDNLP  LL +L +  +   +     LAV+ D
Sbjct: 1   MRMIIVSGRSGSGKSTALDVLEDNGFYCVDNLPAGLLPELAERALINTELAEPLLAVSID 60

Query: 58  ARSADS-LATLRHDIDQLRADGHDVKVFFLTASSETLITRFSETRRSHPLSHRLLPGGNP 116
           AR+  S L      + ++R       V +L A   TL+ RFSETRR HPLS         
Sbjct: 61  ARNLPSHLTRFPQMLSEVRLRNIQCDVLYLDADEATLLKRFSETRRRHPLS--------T 112

Query: 117 SDRLTLSECIELEKEMLADMQEIG-LVMDTSQLSSNKLRGWIK-DLVDLERSPLTLLIES 174
           +DR +L+E I  E  +L  + ++  L ++T+ L+  +LR  +K  L++        LIES
Sbjct: 113 ADR-SLAEAIRDETALLGPIIDLADLKINTTHLNLYQLRDALKLRLLNKPEPGTAFLIES 171

Query: 175 FAFKHGLPLDADLVFDVRMLPNPHYDLALRPLTGRDQPVIDFLDADAEVAEMFNDIRRFV 234
           F FK G+P+DADLVFDVR LPNP++   LR  +G +QPVID+L    +V EMF DI  ++
Sbjct: 172 FGFKRGMPVDADLVFDVRCLPNPYWKPELRDHSGLEQPVIDYLSVQPDVEEMFQDIFAYL 231

Query: 235 EKWLPSFKGDNRSYLTVAIGCTGGQHRSVYLAERLASHF-RATEQVVCRHR 284
            KWLP F   NRSY+T+AIGCTGG HRSVYL ERL     ++ + V  RHR
Sbjct: 232 NKWLPRFAASNRSYVTIAIGCTGGHHRSVYLTERLGQVLQQSLKNVQVRHR 282