Pairwise Alignments

Query, 627 a.a., ABC transporter permease from Herbaspirillum seropedicae SmR1

Subject, 435 a.a., TRAP-type C4-dicarboxylate transport system, large permease component from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  218 bits (554), Expect = 6e-61
 Identities = 128/425 (30%), Positives = 222/425 (52%), Gaps = 8/425 (1%)

Query: 203 YNLIVFFVLLIGVCVAGGIPIAFAFGTATM--AYLALATTAPLMIVVSRMDEGMSSLILL 260
           Y +IV F     + +A G+PI FA G +++    +AL   A + ++  +M  G+    LL
Sbjct: 7   YPIIVLFGSF-AIILAVGVPITFAIGLSSLFSILIALPPDAAISVISQKMTVGLDGFTLL 65

Query: 261 SVPLFVLLGSLLEMSGLAKTLIDFMAALLGHVRGGLQYVLLGAMFLVSGISGSKAADMAA 320
           ++P FVL G+++   G+A+ L++   AL+G + G L +  + A  L   ISGS  A  AA
Sbjct: 66  AIPFFVLAGNIMNTGGIARRLVNLAQALVGRLPGSLAHCNILANTLFGAISGSAVASAAA 125

Query: 321 IAPALFPEMKKRGSKPEELVALLSSSGAMTETIPPSLVLITIG-AVCSVSITALFIGGLM 379
           +   + P  +K G  P    A+  +S  +   IPPS VLI    A    S+ ALF+ G +
Sbjct: 126 VGGIMSPLQEKEGYSPAFSTAINVASAPIGLMIPPSNVLIVYSLASGGTSVAALFLAGYL 185

Query: 380 PAAIATIAIAVVCWMRARREPMPDVKRAPLSLIVKALIAAIPALALPMLIRVAVIEGVAT 439
           P  +  +A+  V  + A R   P  +R  L   +     ++P+L L  +I   +I GV T
Sbjct: 186 PGILTALALMTVAALYAHRHHYPVAERINLRQFLSVFRDSLPSLLLIFIIIGGIIGGVFT 245

Query: 440 ATEVATIGVAYTVVVGLIMHLFMRHLSFKRLYPMLIESAALSGAILLIIGMATAMAWALT 499
            TE + I V Y++ +  I     R ++  +L  +L++S   S  +LL++G +  M+WA+T
Sbjct: 246 PTEASAIAVIYSLALAAIY----REINVSKLRDILLDSVVTSSIVLLLVGCSMGMSWAMT 301

Query: 500 QSGFSAKLVALMQGVPGGGVGFLLITIVIFIVLGSLLEGIPAIVLFGPLLFPVARSLGVH 559
            +     +  ++  V       LLI  +I + +G+ ++  PAI++F P+  P+A+ LG+ 
Sbjct: 302 NADVPELINEMITSVSENKWVILLIINLILLFVGTFMDITPAILIFTPIFLPIAQHLGID 361

Query: 560 DVHYAMVVILAMGIGLFAPPFGVGFYAACAIGKVSPDGVFNRVWGYLAALVVALLVVAFV 619
            VH+ ++++  + IGL  PP G   +  C+IGK+S D V   +     AL V + ++ + 
Sbjct: 362 PVHFGIIMVFNLTIGLCTPPVGTILFVGCSIGKISIDKVVKPLLPMFLALFVVMAMICYF 421

Query: 620 PWISI 624
           P +S+
Sbjct: 422 PQLSL 426