Pairwise Alignments

Query, 881 a.a., DNA gyrase subunit A from Herbaspirillum seropedicae SmR1

Subject, 875 a.a., DNA gyrase (type II topoisomerase), subunit A from Escherichia coli BL21

 Score = 1003 bits (2593), Expect = 0.0
 Identities = 517/880 (58%), Positives = 659/880 (74%), Gaps = 19/880 (2%)

Query: 1   MDQFAKETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHEMNNVWN 60
           M   A+E  P+++EEE++ SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM+ + N WN
Sbjct: 1   MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60

Query: 61  RPFVKCARVVGEVMGKYHPHGDASIYDTLVRMAQDFSLRYTLVDGQGNFGSIDGDGAAAM 120
           + + K ARVVG+V+GKYHPHGD+++YDT+VRMAQ FSLRY LVDGQGNFGSIDGD AAAM
Sbjct: 61  KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120

Query: 121 RYTECRLDKISNELLADIEKETVDFVPNYDGKEKEPSVLPTRIPNLLVNGSSGIAVGMAT 180
           RYTE RL KI++EL+AD+EKETVDFV NYDG EK P V+PT+IPNLLVNGSSGIAVGMAT
Sbjct: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180

Query: 181 NIPPHNITEVINGALHLLANEQCTIDELIELVPAPDFPTGGIIYGVSGVRDGYRTGRGRV 240
           NIPPHN+TEVING L  + +E  +I+ L+E +P PDFPT  II G  G+ + YRTGRG+V
Sbjct: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240

Query: 241 VMRAKTHFEEYGREGRIAIIVDELPYQVNKKALLERIAELVRDKKLEGISDLRDESDKSG 300
            +RA+   E   + GR  IIV E+PYQVNK  L+E+IAELV++K++EGIS LRDESDK G
Sbjct: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300

Query: 301 MRVVIELKRGEVPEVVLNNLYKQTQLQDTFGMNMVALVDGQPRLLNLKQLLECFLSHRRE 360
           MR+VIE+KR  V EVVLNNLY QTQLQ +FG+NMVAL  GQP+++NLK ++  F+ HRRE
Sbjct: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360

Query: 361 VVTRRTVFELRKARERGHVLEGLAVALANIDDFIAIIRAAPTPPIAKAELMSRAWDSSMV 420
           VVTRRT+FELRKAR+R H+LE LAVALANID  I +IR APTP  AK  L++  W    V
Sbjct: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420

Query: 421 REMLARAGEANEGGIEAFRPESLPAHYGIQSDGLYKLSDEQAQEILQMRLQRLTGLEQDK 480
             ML RAG+      +A RPE L   +G++ DGLY L+++QAQ IL +RLQ+LTGLE +K
Sbjct: 421 AAMLERAGD------DAARPEWLEPEFGVR-DGLYYLTEQQAQAILDLRLQKLTGLEHEK 473

Query: 481 IVNEYKDVMAQIADLLDILAKPARVTAIITDELNAAKNDFGIGAKDERRSTIEHNATDLA 540
           +++EYK+++ QIA+LL IL    R+  +I +EL   +  FG    D+RR+ I  N+ D+ 
Sbjct: 474 LLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFG----DKRRTEITANSADIN 529

Query: 541 TEDLITPQDMVVTLSHTGYMKSQPVSEYRAQKRGGRGKQAMATKDDDWIDQLFIANTHDY 600
            EDLIT +D+VVTLSH GY+K QP+SEY AQ+RGG+GK A   K++D+ID+L +ANTHD+
Sbjct: 530 LEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDH 589

Query: 601 ILCFSNRGRLYWLKVWEVPQGSRNSRGKPIVNMFPLQDGEKITVILPVSGANRSFPDDRY 660
           ILCFS+RGR+Y +KV+++P+ +R +RG+PIVN+ PL+  E+IT ILPV+     F +   
Sbjct: 590 ILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVT----EFEEGVK 645

Query: 661 VFMATSLGTVKKTPLSDFSNPRKAGIIAVDLDEGDFLIGAALTDGQHDVMLFSDGGKAVR 720
           VFMAT+ GTVKKT L++F+  R AG +A+ L EGD LIG  LT G+ +VMLFS  GK VR
Sbjct: 646 VFMATANGTVKKTVLTEFNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVR 705

Query: 721 FDENDVRPMGRTARGVRGMNLEETQQVIALLVAENEQQSVLTATENGFGKRTPITEYTRH 780
           F E+ VR MG    GVRG+ L E  +V++L+V   E  ++LTAT+NG+GKRT + EY   
Sbjct: 706 FKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGE-GAILTATQNGYGKRTAVAEYPTK 764

Query: 781 GRGTKGMIAIQTSERNGKVVAATLVDSTDEIMLITTGGVLIRTRVSEIREMGRATQGVTL 840
            R TKG+I+I+ +ERNG VV A  VD  D+IM+IT  G L+RTRVSEI  +GR TQGV L
Sbjct: 765 SRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVIL 824

Query: 841 IAVEDGTKLSGLQRVVESDVE---DAVEGDNAEGAGSEAP 877
           I   +   + GLQRV E   E   D ++G  AEG    AP
Sbjct: 825 IRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAP 864