Pairwise Alignments

Query, 304 a.a., ABC transporter permease from Herbaspirillum seropedicae SmR1

Subject, 328 a.a., High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  193 bits (490), Expect = 5e-54
 Identities = 115/303 (37%), Positives = 172/303 (56%), Gaps = 32/303 (10%)

Query: 13  LQFGVMLFLIASGLTLIFGVMNFVNLAHGSFFMIGAYVAAVVAGASGSF------WLGLL 66
           L  G+++F+IASGLTL+FG+M+ +N  HG F  +GA+VA  V  + GS+      WL L+
Sbjct: 40  LAMGMIVFIIASGLTLVFGLMDVLNFGHGVFIALGAFVATTVLASMGSYTTADSLWLNLV 99

Query: 67  VALPA-------TAALGFLLEWVVFRRLYQKDHMVQVLATFAFILIFNDGVRMIWGPQPL 119
             LPA         ALG++ E ++ R +Y   H+ Q+L T   ++I  + +++IWGP  +
Sbjct: 100 ALLPAMLVAMAVAGALGWVFERLIIRPVYGM-HLKQILITMGGMIIGEEMIKVIWGPGQI 158

Query: 120 PLNMPAAFAGPVNLFGLPYSSYRLLVMAVGVVVAIALYFLINRTRIGMWVRAGANNLEMV 179
            L +P +  G   L       YRLL + VG  V  A+ + +NRT++G+ VRAG  + EMV
Sbjct: 159 ALPLPESLRGSFILGDASVEKYRLLAVLVGAAVFAAMVWTLNRTKVGLLVRAGVQDREMV 218

Query: 180 TAMGINIRLLFRLVFSFGLLLAALAGIMLGPL-VAVQAGMGDDVLILAFVVVVIGGIGSV 238
            ++G  IR LF  VF  G  LA L G+M G     V   MG  V +L F+V++IGG+GS 
Sbjct: 219 ESLGYRIRQLFIGVFVVGSALAGLGGVMWGLYQQTVLPQMGAQVNVLIFIVIIIGGLGST 278

Query: 239 PGAAIGALIVGVVDTLGRSLLPQLFALFLSADAAASVGPALGSMMIYLVMIAVLFWRPSG 298
            GA IGAL+VG++      L+P++ ALF +                  +M+A+L WRP G
Sbjct: 279 LGALIGALLVGLMANYTGFLMPKV-ALFSN----------------IALMVAILLWRPQG 321

Query: 299 LFP 301
           ++P
Sbjct: 322 VYP 324