Pairwise Alignments

Query, 1242 a.a., nitrate reductase A subunit alpha from Herbaspirillum seropedicae SmR1

Subject, 1257 a.a., nitrate reductase from Pseudomonas simiae WCS417

 Score = 1729 bits (4479), Expect = 0.0
 Identities = 813/1253 (64%), Positives = 977/1253 (77%), Gaps = 30/1253 (2%)

Query: 1    MSHFLDRLKFMSRVKSTFANGHGAVVNEDRQWENAYRSRWQHDKVVRSTHGVNCTGSCSW 60
            MSH LD+L+F +R ++ F+ GHG    E R WEN Y SRWQ+DK+VRSTHGVNCTGSCSW
Sbjct: 1    MSHLLDQLRFFNRKQNEFSEGHGETRKESRDWENVYHSRWQYDKIVRSTHGVNCTGSCSW 60

Query: 61   KVYVKNGLITWETQQTDYPRTRPDLPNHEPRGCPRGASYSWYVYSAQRVKYPMIRGRLMK 120
            K+YVKNGLITWETQQTDYPRTR DLPNHEPRGCPRGASYSWY+YSA R+KYP IR  L+K
Sbjct: 61   KIYVKNGLITWETQQTDYPRTRNDLPNHEPRGCPRGASYSWYIYSANRLKYPKIRKPLLK 120

Query: 121  LWQEARKTMEPVQAWAAITGDAAKAQHYKSVRGLGGFVRTDWETANEIIAAANAHTIKEY 180
            LW+EAR T+ PV AWA+I  D AKA+ YKS RG+GGF+R++WE  NEIIAA+N +TIK+Y
Sbjct: 121  LWREARLTLAPVDAWASIVEDKAKAESYKSKRGMGGFIRSNWEEVNEIIAASNVYTIKQY 180

Query: 181  GPDRVVGFSPIPAMSMVSYAAGARYLSLIGGVPLSFYDWYCDLPPASPQVWGEQTDVPES 240
            GPDR+VGFSPIPAMSMVSYAAG+RYLSL+GGV LSFYDWYCDLPPASP VWGEQTDVPES
Sbjct: 181  GPDRIVGFSPIPAMSMVSYAAGSRYLSLLGGVCLSFYDWYCDLPPASPMVWGEQTDVPES 240

Query: 241  ADWYNAGYLMVWGSNVPLTRTPDAHFYTEVRYKGTKTVAVSSDFGEMVKFGDIWLAPRQG 300
            ADWYN+ Y++ WGSNVP TRTPDAHF+TEVRYKGTKTVA++ D+ E+ K  D+WL P+QG
Sbjct: 241  ADWYNSNYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTVAITPDYSEVAKLTDLWLNPKQG 300

Query: 301  TDAALAMAMGHVVLKEFHLERPSPYFRSYVKQYTDLPMLVRLVERDG-----RYLPEHLL 355
            TDAALA A  HV+ KEFHL+ PSPYF  Y K++TDLP+LV L    G      + P+  L
Sbjct: 301  TDAALAQAFNHVIFKEFHLDHPSPYFTDYAKRFTDLPVLVMLKPVTGFAPGAGFQPDRFL 360

Query: 356  RASQLPGQLEEANNADWKTLAIDAATGEIVAPNGSIGYRWGEGQVNDGAKVGRWNLESRD 415
            RAS L   L + NN +WKT+A+D + GE+V+P GSIGYRWGE         G+WN+ +++
Sbjct: 361  RASDLVDNLGQDNNPEWKTIALDES-GELVSPQGSIGYRWGEK--------GKWNILAKE 411

Query: 416  GHSGREIDPLLSLVEAHDEVVAVSFNYFGGDDAEQLLE--------RRVPVRHVRLANGS 467
            G  GR ID  LSL+ A  +V  V F YF G+  E            RRVPV  V LA+GS
Sbjct: 412  GGEGRAIDLKLSLMGA--DVAEVGFPYFAGESHEHFQHVAGDAVQFRRVPVHSVTLADGS 469

Query: 468  TARVATVHDLMMANYGVDQGLGG-DVPRSYDD-DLPYTPAWQEKHTGVKRELVIQVAREF 525
             A+VATV DL  AN  +D+GLGG +V + YDD  +P TPAWQE  TGV RE  IQ+AREF
Sbjct: 470  VAKVATVFDLSAANLAIDRGLGGSNVAKDYDDASVPGTPAWQEAITGVSREKAIQIAREF 529

Query: 526  AQNAHDTEGRSMVILGAALNHWYHNDMIYRGIINLLMMCGCIGKSGGGWAHYVGQEKLRP 585
            A NA  T+GRSM+I+GAA+NHWYH DM YRG+IN+LM+CGC+G++GGGWAHYVGQEKLRP
Sbjct: 530  ADNADKTKGRSMIIVGAAMNHWYHMDMNYRGLINMLMLCGCVGQTGGGWAHYVGQEKLRP 589

Query: 586  QFGWAPLAFATDWVRPPRQMNSTSFFYAHTSQWRHEKLGLDEIVAPTADHDKLAAMSMID 645
            Q GW PLAF  DW RPPRQMN TSFFY H+SQWRHEK+ + ++++P AD  +    ++ D
Sbjct: 590  QCGWLPLAFGLDWSRPPRQMNGTSFFYGHSSQWRHEKMNMHDVLSPMADKSQFPTHAL-D 648

Query: 646  MNAKSERMGWLPSAPQLETNPLDVCDAAQAAGQSPQDYLKAALKSGAVNMSCDDPDNPKN 705
             N ++ER GWLPSAPQL TNPL +C  A A G  P+DY+  A + G +  +C+ PD+P N
Sbjct: 649  YNIRAERAGWLPSAPQLNTNPLHICREAAAVGMDPKDYVVKAWQDGTLRFACEQPDSPAN 708

Query: 706  FPRNMFVWRSNILGSSGKGHEYFLKYLLGTQNALFDDA---AEAIRPSEVKYREQAAEGK 762
            FPRNMF+WRSN+LGSSGKGHEY LKYLLGT+N + ++        +P+E ++ +  A GK
Sbjct: 709  FPRNMFIWRSNLLGSSGKGHEYMLKYLLGTKNGVMNEDIGFGGESKPTEAEWVDDGAIGK 768

Query: 763  LDLLVTLDFRMSTTCLYADIVLPTATWYEKDDLNTSDMHPFIHPLSEAVQPLWDSKTDWE 822
            LDL+ TLDFRMS+TC+Y+DIVLPTATWYEKDD+NTSDMHPFIHPLS A+ P W+S++DW+
Sbjct: 769  LDLVTTLDFRMSSTCVYSDIVLPTATWYEKDDMNTSDMHPFIHPLSAAIDPAWESRSDWD 828

Query: 823  IYKALAKKFSEIGGEHLGTRSDIVLQPLMHDTPAELGQPFEPKDWKKGECDLIPGKTAPN 882
            IYK +AK FS +   HLG   D+V  PLMHD+  EL QPF   DWK      +PGK APN
Sbjct: 829  IYKGIAKAFSAMAVGHLGVEKDLVTVPLMHDSVGELAQPFGGTDWKSAGVAPVPGKNAPN 888

Query: 883  FVVVERNYRDIYKKFTSVGPLLDKLGNGGKGINWNTEHEVGELAGLNKRVTEAGVSQGRP 942
              VVER+Y +IYKKFTS+GPLL+KLGNGGKGINWNT+ EV  L  LN    +AG+S GRP
Sbjct: 889  MAVVERDYPNIYKKFTSLGPLLEKLGNGGKGINWNTDEEVKFLGELNHHEGDAGISLGRP 948

Query: 943  RLDTAIDACEMILTFAPETNGHVSVKAWEALGKITGRDHTHLAVGREHDKIRLRDVQAQP 1002
            ++DTAIDA E+IL+ APETNGHV+VKAW AL + TG DH+HLA+ + H+ IR RD+QAQP
Sbjct: 949  KIDTAIDAAEVILSLAPETNGHVAVKAWAALSEFTGIDHSHLALPKAHEAIRFRDIQAQP 1008

Query: 1003 RKIISAPTWSGLESEEVSYNAGYTNVHEYIPWRTLTGRQQFYQDHRWMLDFGEGLCVYKP 1062
            RKIIS+PTWSGLE + VSYNAGYTNVHE IPWRTLTGRQQFYQDH WM  FGE L  Y+P
Sbjct: 1009 RKIISSPTWSGLEDDHVSYNAGYTNVHENIPWRTLTGRQQFYQDHPWMQAFGEQLMSYRP 1068

Query: 1063 AIDTKTVAPMLNRHPNGEKEIVLNFLTPHQKWGIHSTYSDNLRMLTLSRGGPHVWISEDD 1122
             ++T+T+  +  +  NGE EIVLN++TPHQKWGIHSTYSDNL MLTLSRGGP VW+SE D
Sbjct: 1069 PVNTRTIEGVKGKRSNGETEIVLNWITPHQKWGIHSTYSDNLLMLTLSRGGPIVWLSEVD 1128

Query: 1123 ARRAGLVDNDWVEVFNSNGTLTARVVVSQRIPGGMCLMYHAQEKIVNTPGAQLSGQRGGI 1182
            A+RAG+ DNDW+E FN NG LTAR VVSQR+  GM +MYHAQE+IVN PG++ +  RGG 
Sbjct: 1129 AQRAGIEDNDWIECFNVNGALTARAVVSQRVKEGMVMMYHAQERIVNVPGSETTKTRGGH 1188

Query: 1183 HNSVTRAVLKPTHMIGGYAQLSYGFNYYGTVGSNRDEFIVLRKMNKVDWLQGS 1235
            HNSVTR VLKPTHMIGGYAQ +YGFNYYGTVG NRDEF+V+RKM KVDWL GS
Sbjct: 1189 HNSVTRVVLKPTHMIGGYAQQAYGFNYYGTVGCNRDEFVVVRKMAKVDWLDGS 1241