Pairwise Alignments

Query, 1242 a.a., nitrate reductase A subunit alpha from Herbaspirillum seropedicae SmR1

Subject, 814 a.a., Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 70.9 bits (172), Expect = 4e-16
 Identities = 79/298 (26%), Positives = 119/298 (39%), Gaps = 58/298 (19%)

Query: 43  DKVVRSTHGVNCTGSCSWKVYVKNGLITW-ETQQT---DYPRTRPDLPNHEPRGCPRGAS 98
           +KVV S   VNC   C  +++V +G I + ET  T   DY         H+ R C RG S
Sbjct: 56  EKVVWSACTVNCGSRCPLRMHVVDGEIKYVETDNTGNDDYDGL------HQVRACLRGRS 109

Query: 99  YSWYVYSAQRVKYPMIRGRLMKLWQEARKTMEPVQAWAAITGDAAKAQHYKSVRGLGGFV 158
               VY+  R+KYPM R                                    RG G F 
Sbjct: 110 MRRRVYNPDRLKYPMKR---------------------------------VGARGEGKFE 136

Query: 159 RTDWETANEIIAAANAHTIKEYGPDRV---VGFSPIPAMSMVSYAAG----ARYLSLIGG 211
           R  W+ A +IIA      IKEYG + +    G   +      S+  G    AR ++  GG
Sbjct: 137 RISWDEAYDIIATNMQRLIKEYGNESIYLNYGTGTLGGTLTRSWPPGKTLVARLMNCCGG 196

Query: 212 VPLSFYDWYCDLPPAS--PQVWGEQTDVPESADWYNAGYLMVWGSNVPLTRTPD---AHF 266
             L+ Y  Y     A+     +G   D    +D  N+  ++++G+N   TR       ++
Sbjct: 197 Y-LNHYGDYSSAQIAAGLNYTYGGWADGNSPSDIENSKLVVLFGNNPGETRMSGGGVTYY 255

Query: 267 YTEVRYKGTKTVAVSSDFGEMVKFG--DIWLAPRQGTDAALAMAMGHVVLKEFHLERP 322
             + R K    + +          G  D W+  R GTDAAL   + +V++ E  +++P
Sbjct: 256 LEQARQKSNARMIIIDPRYTDTGAGREDEWIPIRPGTDAALVNGLAYVLITENMVDQP 313



 Score = 40.0 bits (92), Expect = 8e-07
 Identities = 26/97 (26%), Positives = 51/97 (52%), Gaps = 7/97 (7%)

Query: 737 NALFDDAAEAIRPSEVKYREQAAEGKLDLLVTLDFRMSTTCLYADIVLPTATWYEKDDL- 795
           N L +  +E  R  E+   ++    K +++V +D  M+++  YADI+LP  T  E+ D  
Sbjct: 484 NCLINQHSEINRTHEILQDDK----KCEMIVVIDCHMTSSAKYADILLPDCTASEQMDFA 539

Query: 796 --NTSDMHPFIHPLSEAVQPLWDSKTDWEIYKALAKK 830
              +     ++    +A++P ++ KT +E+   LAK+
Sbjct: 540 LDASCGNMSYVIFTDQAIKPRFECKTIYEMTSELAKR 576



 Score = 36.2 bits (82), Expect = 1e-05
 Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 19/134 (14%)

Query: 1033 PWRTLTGRQQFYQDH------RWMLDFGE---GLCVYKPAIDTKTVAPMLNRHPNGEKEI 1083
            P  T +G+ + Y          W L  G+    L +Y P  +     P+ ++ P      
Sbjct: 642  PLTTPSGKIEIYSQALADIAATWELPEGDVIDPLPIYTPGFENYN-DPLTDKFP------ 694

Query: 1084 VLNFLTPHQKWGIHSTYSDNLRMLTLSRGGPHVWISEDDARRAGLVDNDWVEVFNSNGTL 1143
             L     H K  +HSTY +   +    R    +WI+  DA++ G+ + D V +FN  G +
Sbjct: 695  -LQLTGFHYKARVHSTYGNVDVLKAACR--QEMWINPMDAQKRGINNGDKVRIFNDRGEV 751

Query: 1144 TARVVVSQRIPGGM 1157
                 V+ R+  G+
Sbjct: 752  HIEAKVTPRMMPGV 765



 Score = 30.0 bits (66), Expect = 8e-04
 Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 5/75 (6%)

Query: 498 DDLPYTPAWQEKHTGVKRELVIQVAREFAQNAHDTEGRSMVILGAALNHWYHNDMIYRGI 557
           D +  TP W  + TG+  + +I++ARE       +   + +  G       + ++  R I
Sbjct: 347 DGIAKTPEWAAQITGIPADRIIKLAREIG-----SAKPAYICQGWGPQRHANGEIATRAI 401

Query: 558 INLLMMCGCIGKSGG 572
             L ++ G +G +GG
Sbjct: 402 SMLAILTGNVGINGG 416