Pairwise Alignments

Query, 334 a.a., tRNA pseudouridine synthase B from Herbaspirillum seropedicae SmR1

Subject, 314 a.a., tRNA pseudouridine synthase B (NCBI) from Escherichia coli BW25113

 Score =  261 bits (668), Expect = 1e-74
 Identities = 144/311 (46%), Positives = 190/311 (61%), Gaps = 14/311 (4%)

Query: 30  PRLPRVPVHGVLLLDKPVGLSSNDALIRAKRMLNAPKAGHTGTLDPFATGLLPLCFGEAT 89
           PR     ++GVLLLDKP G+SSNDAL + KR+ NA +AGHTG LDP ATG+LP+C GEAT
Sbjct: 4   PRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEAT 63

Query: 90  KFSQDLLEADKTYEAVVHLGVRTDTGDTEGQVLSERPVEVSVEQIEAAMAQFRGPISQVP 149
           KFSQ LL++DK Y  +  LG RTDT D +GQ++ ERPV  S EQ+ AA+  FRG I Q+P
Sbjct: 64  KFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIP 123

Query: 150 PMHSALKRDGKPLYEYARAGITLEREARNVTIHALELLNYQAPMLRIRVTCSKGTYIRVL 209
            M+SALK  GK LYEYAR GI + REAR +T++ L  + ++   L + + CSKGTYIR +
Sbjct: 124 SMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTI 183

Query: 210 GEDIGEVLGCGAHLNALRRIGVGPLTLEGAVTLESVDAAGE---------LEARKALLLP 260
            +D+GE LGCGAH+  LRR+ V    +E  VTLE +    E          E    LL+P
Sbjct: 184 IDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMP 243

Query: 261 VDGLLRSFPAVQLSDELARRFLHGQRLPLGKEGVAVPQQTGRVRVYRSSDAALLGTGLLQ 320
           +D     +P V L    +  F +G   P+   G  +    G VRV    +   +G G + 
Sbjct: 244 MDSPASDYPVVNLPLTSSVYFKNGN--PVRTSGAPL---EGLVRVTEGENGKFIGMGEID 298

Query: 321 EYAILAPERLV 331
           +   +AP RLV
Sbjct: 299 DEGRVAPRRLV 309