Pairwise Alignments

Query, 156 a.a., transcription antitermination protein NusB from Herbaspirillum seropedicae SmR1

Subject, 166 a.a., antitermination protein NusB from Pseudomonas simiae WCS417

 Score =  110 bits (275), Expect = 1e-29
 Identities = 59/139 (42%), Positives = 80/139 (57%)

Query: 17  RHRAREFALQGLYQWLLNHEDAGAIEAHIREAHGFDKADAEHFDTLLTGAIRDAEKLRAG 76
           R  AR+ A Q LYQ  L       IEA  R  + F  AD  +F  +L G      ++   
Sbjct: 28  RRAARQLATQALYQRHLAGASLNEIEAQFRVDNDFTFADLPYFHDILHGVHAHLTEIDTA 87

Query: 77  LAPLIDRPIKELSPVEHAALLIGAYELQNHIEIPYKVVINEAVELTKSFGGIDGHKYVNG 136
           LAP +D  I+EL PVE   + + A+EL   +++PY+VVINE +EL K +G  DGHK+VNG
Sbjct: 88  LAPCLDLTIEELDPVELCVMRLSAWELLYRVDVPYRVVINEGIELAKVYGSTDGHKFVNG 147

Query: 137 VLDRFAAQTRATEVEAAGR 155
           VLD+ A + R  EV+A  R
Sbjct: 148 VLDKLAPRLREAEVKAYKR 166