Pairwise Alignments

Query, 487 a.a., DEAD/DEAH box helicase from Herbaspirillum seropedicae SmR1

Subject, 454 a.a., ATP-dependent RNA helicase RhlE from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  433 bits (1113), Expect = e-126
 Identities = 228/424 (53%), Positives = 299/424 (70%), Gaps = 7/424 (1%)

Query: 18  FEDFGLSPDILKALAEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQR 77
           F+  GL+PDIL+A+AEQGY  PTPIQ QAIP VL+GRD+M +AQTGTGKTAGF+LP++Q 
Sbjct: 3   FDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62

Query: 78  LLQHASHSASPARHPVRALILTPTRELADQVADNVAAYCRFTPLRSTVVFGGVDMAPQTA 137
           L+ H  H+    R PVRALILTPTRELA Q+ +NV  Y ++  +RS VVFGGV + PQ  
Sbjct: 63  LITHQPHAKG--RRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 138 ILRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRMLDMGFLPDLQRIINLLPKQ 197
            LR GV++++ATPGRLLD   Q  V L Q +ILV+DEADRMLDMGF+ D++R++  LP +
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 198 RQNLLFSATFSPEIKKLAASFQNNPVTIEVARSNATAENVTQTIYKVEEAAKADAVSFII 257
           RQNLLFSATFS +IK LA     NP+ IEVAR N  +E VTQ ++ V++  K + +S +I
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMI 240

Query: 258 RQRELKQVIVFSNTKIGASRLARTLVAEGVKASAIHGDKTQSERMAALEAFKQGQIEVLV 317
            Q   +QV+VF+ TK GA+ LA  L  +G++++AIHG+K+Q  R  AL  FK G I VLV
Sbjct: 241 GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV 300

Query: 318 ATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASGDAISLFCDKDDRLLTDI 377
           ATD+AARGLDI ELP V+NY+LP   EDYVHRIGRTGRA A+G+A+SL C  + +LL DI
Sbjct: 301 ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI 360

Query: 378 EKLIKKKFERAELTGFAP----RARHERSDRAERGERSERGERSDRGDRSDRGERSRSSR 433
           EKL+KK+  R    G+ P    +A   ++ R +RG    RG   ++G  + R ++ R   
Sbjct: 361 EKLLKKEIPRITTPGYEPDPSIKAEPIQNGRQQRGGGGGRGRGQNQGG-AGRSQQPRRQD 419

Query: 434 EGGA 437
            G A
Sbjct: 420 SGAA 423