Pairwise Alignments

Query, 525 a.a., response regulator from Herbaspirillum seropedicae SmR1

Subject, 522 a.a., GGDEF domain protein from Pseudomonas putida KT2440

 Score =  358 bits (919), Expect = e-103
 Identities = 199/487 (40%), Positives = 283/487 (58%), Gaps = 11/487 (2%)

Query: 22  LFVVLICAAIAGGHLWQSMTARGVQLENNRSYSGNVAKALARHAYDVLQATDGLLLDMSD 81
           L V+L    + G  +W+         EN  S   N+A+A A+HA D ++  D +   +++
Sbjct: 33  LVVMLAFVLVEGWRIWRDYRFAYNNAENMVS---NLARATAQHAEDAIRQVDAITGALAE 89

Query: 82  RIDSVGIAHARLVDLMPMLRRLSSEMPQLDGLYVFDEHGKRLLTSSAPPLAPANNSDRDY 141
           R++  G  H     L  +L +    MPQL GL+V+   G  ++T  A     ANN+DRDY
Sbjct: 90  RLEGDGFDHIDRPRLHALLAQQKRIMPQLHGLFVYGPDGSWIVTDQAAIPPKANNADRDY 149

Query: 142 FIWHRDHDDVGPHVGKALLSRSTGRWIIPMSRRLNHPDGSFAGVLLATLDINHFNQLYRT 201
           F +HR H+D G H+G  + SRSTG  IIP+SRRL H DGSFAGVLL T+ +  F + Y  
Sbjct: 150 FAYHRSHNDPGVHIGSVVRSRSTGDLIIPISRRLEHADGSFAGVLLGTIKVAWFVRYYGD 209

Query: 202 VEIGKGGSIALLLRDGTLLTRMPFDPGYINRDFSQGRLFLEGLPHSPFGYLEVVSPLDAR 261
            +I + G++ L  RDGTLL R PF    I R  +   +F   LP++  G  E V+ +D  
Sbjct: 210 FKIDERGALVLAKRDGTLLVRRPFVEQVIGRSLANSEIFRNHLPYATEGVAEAVAVVDGT 269

Query: 262 QRFLSYQAVDKYPLVLVVTLAREEALADWKQQTFVYGAAVLLLLAIIGVFGWRLVGQIEL 321
            R   Y+A+  YPLV+   L+RE  +A W+       A +LLLL  +  FG  ++ Q+  
Sbjct: 270 PRLYGYRALSSYPLVVEAGLSRESIVAPWRYDAIKSVAVLLLLLVGLAAFGGVVLRQLRE 329

Query: 322 RLRAEDRALQAMGELQMANHRLEMLAHQDGLTGLANRRHLDTMLETEFKRAERSGAALAL 381
           R+  E   LQ       A+  L+ LA  D LTGL NRR LD + E E +RA R G  LAL
Sbjct: 330 RIVIERALLQ-------AHQTLKALALTDSLTGLGNRRRLDGVFEPELRRARRQGYPLAL 382

Query: 382 IMIDVDFFKQYNDLYGHQAGDECLRRVAGVLKERQRRPGDLAARYGGEEMAMLLPGTDAE 441
           +M+D+D+FK YND YGH AGD+CLRR A VL++  +RP DLA RYGGEE  +LLP TD  
Sbjct: 383 VMLDLDYFKAYNDHYGHPAGDQCLRRFAEVLQQALKRPADLAVRYGGEEFTLLLPDTDGR 442

Query: 442 GACAVAEKLRAGIQALELPHRGNPVGVVTVSVGVCALELLPSAARSVQALLGAADAALYE 501
           GA  + ++L+  ++   L H  +P+G V+ S G+  ++L      +++AL+ AAD ALY+
Sbjct: 443 GAELLVQELQQLLRRQALEHAASPLGRVSFSAGIAVVDLAREGG-TIEALVAAADGALYQ 501

Query: 502 AKHEGRN 508
           AK +GR+
Sbjct: 502 AKQQGRD 508