Pairwise Alignments

Query, 326 a.a., transcriptional regulator from Herbaspirillum seropedicae SmR1

Subject, 319 a.a., LsrR, transcriptional repressor of lsr operon from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 87.8 bits (216), Expect = 3e-22
 Identities = 72/313 (23%), Positives = 142/313 (45%), Gaps = 22/313 (7%)

Query: 15  RVARLYYFQNMTTAAIADEIGTSRATVSRLLSFALERGLVEIRVHDPQQVSGSLEAAIAN 74
           R+A  YY   +T + I++ +G +R  VSRLL    + G++ ++++   +     E A+ N
Sbjct: 20  RIAWFYYHDGLTQSEISERLGLTRLKVSRLLEKGHQSGIIRVQINSRFEGCLEYENALRN 79

Query: 75  HYRLHSIQVVPVAAAATDKETLQRVTCHAAAYVNSLVTPGTIIGLAWG----TTVAQIAD 130
           H+ L +I+V+P   A  D +   R+   AA  +   + P  ++ + +G    TT+ +++ 
Sbjct: 80  HFALQNIRVLP---ALPDADIGLRLGIGAAHMLMESLRPQQLLAVGFGEATMTTLKRLSG 136

Query: 131 QLLPRHVHDVDVVALNGSGSGASFINSFSESIVSRFAQNYGARAHHLPVPAFFDYPETRT 190
            +  + +  V +     SG    ++    +        +       +P P      E   
Sbjct: 137 FISAQQIRLVTL-----SGGVGPYMTGIGQ-------LDAACSVSIMPAPLRASSQEIAC 184

Query: 191 ALWREKSIKAIRDLQERASILLFSIGA--EATGSYIHTAGYLGEEERQILRDEGLVGDIA 248
            L  E S++ +    + A   +  IGA  +   + I  +GY+ + E+ ++  +G VGDI 
Sbjct: 185 TLRNENSVRDVMLTAQAADAAIVGIGAINQKDQASILKSGYITQGEQLMIGRKGAVGDIL 244

Query: 249 TVFFRADGS-WRDVAFNARNSGPDMDCFTRAAHALCVVSGAGKLPGLKAALRGGFINELI 307
             FF A G    D+  +    G  ++  +     + V  G  K   + AA+RG +IN L+
Sbjct: 245 GYFFDAHGEIIPDIKIHNELIGLKLNSLSTIPTVIGVAGGEQKAEAIIAAMRGNYINALV 304

Query: 308 IDEPSARLLVEQI 320
            D+ +A  +++ I
Sbjct: 305 TDQKTAGKIIQII 317