Pairwise Alignments

Query, 337 a.a., RNA polymerase sigma factor RpoS from Herbaspirillum seropedicae SmR1

Subject, 330 a.a., RNA polymerase sigma factor (NCBI) from Escherichia coli BW25113

 Score =  293 bits (751), Expect = 3e-84
 Identities = 159/315 (50%), Positives = 215/315 (68%), Gaps = 4/315 (1%)

Query: 25  EIDEP--EVIDGDAGEEVQEAAPAEGVDELKKVLAAELSTDTTQHYLNKIGAKPLLTAAE 82
           E DE   EV D  A  E + +      +EL    A +   D TQ YL +IG  PLLTA E
Sbjct: 16  EFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEE 75

Query: 83  ELHFATQAKAGEFVARQKMIEHNLRLVVSIAKHYINRGVALLDLIEEGNLGLMRAIDKFE 142
           E++FA +A  G+  +R++MIE NLRLVV IA+ Y NRG+ALLDLIEEGNLGL+RA++KF+
Sbjct: 76  EVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFD 135

Query: 143 PERGFRFSTYATWWIRQSIERAIMNQARTVRLPVHMVRELNQILRAKYHLEAQQRDGRDA 202
           PERGFRFSTYATWWIRQ+IERAIMNQ RT+RLP+H+V+ELN  LR     E   +   + 
Sbjct: 136 PERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTA--RELSHKLDHEP 193

Query: 203 SAEDIAHLVDRPVEEVQDVLALSEHAASLDTPLDNDPQASLMDLLPSAVEEHPDTRAESQ 262
           SAE+IA  +D+PV++V  +L L+E   S+DTPL  D + +L+D+L    E  P+   +  
Sbjct: 194 SAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDD 253

Query: 263 EMAVLIREWLKSLSEKQRVVVARRFGLDNDDPSTLEQLASEMGITRERVRQVQQEALIKL 322
           +M   I +WL  L+ KQR V+ARRFGL   + +TLE +  E+G+TRERVRQ+Q E L +L
Sbjct: 254 DMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRL 313

Query: 323 KRLLTSRGVGRDALF 337
           + +L ++G+  +ALF
Sbjct: 314 REILQTQGLNIEALF 328



 Score = 23.5 bits (49), Expect = 0.008
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 3   SNRRDHLPDQDPREEELDDSVDEI 26
           S++ DH P  +   E+LD  VD++
Sbjct: 186 SHKLDHEPSAEEIAEQLDKPVDDV 209