Pairwise Alignments

Query, 420 a.a., 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase from Herbaspirillum seropedicae SmR1

Subject, 369 a.a., 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase from Pseudomonas putida KT2440

 Score =  206 bits (525), Expect = 7e-58
 Identities = 145/397 (36%), Positives = 216/397 (54%), Gaps = 51/397 (12%)

Query: 10  PLVRRNSRRVVISHGGREIVVGGGAPVMVQSMTNTDTADAIGTAIQIKDLARAGSEVVRL 69
           P+ RR SR++ + +    + VGG AP+ VQSMTNTDT D   T  QI+ L  AG ++VR+
Sbjct: 6   PIKRRESRKIWVGN----VPVGGDAPIAVQSMTNTDTNDVAATVAQIQRLVDAGVDIVRV 61

Query: 70  TVNTPEAAAAVPAIREQLDRMGVDVPLVGDFHYNGHTLLTEYPECAQALSKYRINPGNVG 129
           +V   +AA A   I+++     V VPLV D H++    L         L   RINPGN+G
Sbjct: 62  SVPDMDAAEAFGKIKQR-----VSVPLVADIHFDYKIALRVAELGVDCL---RINPGNIG 113

Query: 130 KGAKRDTQFAQMIEVACKYDKPVRIGVNWGSLDQALLARIMDENAGRAEPWSAQAVMYEA 189
               R+ +   +++ A     P+RIGVN GSL++ L  +         EP  A      A
Sbjct: 114 ----REDRVRAVVDAARDRGIPIRIGVNAGSLEKDLQKKY-------GEPTPA------A 156

Query: 190 LVTSAIENAQRAEELGMAGDKIILSCKVSGVQDLIAVYRELARRCDYPLHLGLTEAGMGS 249
           LV SA+ + +  + L     K+  S K S V   +  YR LA++   PLHLG+TEAG   
Sbjct: 157 LVESALRHVEHLDRLDFQDFKV--SVKASDVFMAVEAYRLLAKQIVQPLHLGITEAGGLR 214

Query: 250 KGIVASTAALSVLLQEGIGDTIRISLTPEPGGDRTKEVVVGQEILQTMGLRKFTPMVIAC 309
            G V S   L +LL EGIGDTIRISL  +P     +EV VG +IL+++ LR      IAC
Sbjct: 215 SGTVKSAVGLGMLLAEGIGDTIRISLAADP----VEEVKVGYDILKSLHLRSRGINFIAC 270

Query: 310 PGCGRTTSTVFQDLADKIQTFLREQMPVWKGKYPGVEAMNVAVMGCIVNGPGESKHANIG 369
           P C R    V + + ++++  L + +            ++VAV+GC+VNGPGE+K A++G
Sbjct: 271 PSCSRQNFDVVKTM-NELEGRLEDLL----------VPLDVAVIGCVVNGPGEAKEAHVG 319

Query: 370 ISLPGTGESPAAPVFIDGEKKMTLRGEHIAEEFQKVV 406
           +    TG +P   ++IDG+    L  +++ +E +K++
Sbjct: 320 L----TGGTPNL-IYIDGKPAQKLTNDNLVDELEKLI 351