Pairwise Alignments

Query, 274 a.a., AraC family transcriptional regulator from Herbaspirillum seropedicae SmR1

Subject, 309 a.a., Type III secretion transcriptional regulator HilD from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 69.7 bits (169), Expect = 7e-17
 Identities = 65/294 (22%), Positives = 118/294 (40%), Gaps = 29/294 (9%)

Query: 3   SNSTLPPA--HATNPRPVLSRIRCREEQQLRQV-----FIGLASICHVRQGKKRLQWHHR 55
           SNS   PA  +    + +L+  R + + Q +QV     ++   ++   R GK  +  +H 
Sbjct: 8   SNSHQRPAADNLQKLKSLLTNTRQQIKSQTQQVTIKNLYVSSFTLVCFRSGKLTISNNHD 67

Query: 56  NLHCGPEGLLLIAAGTQLNVANLPRNGEYAADMVSLPASLIERFRLHYPGQGSLASAPPA 115
            ++C   G+L++     +NV     NG    D++ +P   +       P +     A P 
Sbjct: 68  TIYCDEPGMLVLKKEQVVNVTLEEVNGHMDFDILEIPTQRLGALYALIPNEQQTKMAVPT 127

Query: 116 -----VSTTALAPDTLRAWRHLH---ACMQEDAAPELQCQAAEG--------------LL 153
                +  T   P     + HL    +C ++ +     C                   L 
Sbjct: 128 EKAQKIFYTPDFPARREVFEHLKTAFSCTKDTSKGCSNCNNKSCIENEELIPYFLLFLLT 187

Query: 154 LALSLQGAGAALLRDRSDALSHRIEQQLLMLPPEHRSLEQIAASLHCSVSTLRRRLVREQ 213
             L L  +   +L      L  R+   +   P     L  +A  +  S STL+R+L  E 
Sbjct: 188 AFLRLPESYEIILSSAQITLKERVYNIISSSPSRQWKLTDVADHIFMSTSTLKRKLAEEG 247

Query: 214 TGFRELLDKVQLGQALEQLQASSLSIADIAARCGYDSPSRFAVRFRQHFGLSPS 267
           T F ++    ++ QA + L+  + ++  +A +CGYDS S F   F+++F  +PS
Sbjct: 248 TSFSDIYLSARMNQAAKLLRIGNHNVNAVALKCGYDSTSYFIQCFKKYFKTTPS 301